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cytoscape: 3.6.0 -> 3.6.1 #38740

Merged
merged 1 commit into from Apr 19, 2018
Merged

cytoscape: 3.6.0 -> 3.6.1 #38740

merged 1 commit into from Apr 19, 2018

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r-ryantm
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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/cytoscape/versions.

These checks were done:

  • built on NixOS
  • ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape -h’ got 0 exit code
  • ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape --help’ got 0 exit code
  • found 3.6.1 with grep in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
  • directory tree listing: https://gist.github.com/8bad808238fc034c5394a80d8a5c1554

cc @mimadrid for review

cytoscape: 3.6.0 -> 3.6.1
65e18bd 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/cytoscape/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape -h’ got 0 exit code
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape --help’ got 0 exit code
- found 3.6.1 with grep in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
- directory tree listing: https://gist.github.com/8bad808238fc034c5394a80d8a5c1554
@GrahamcOfBorg
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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: cytoscape

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: cytoscape

Partial log (click to expand)

'sampleData/galFiltered.sif' -> '/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/share/sampleData/galFiltered.sif'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
strip is /nix/store/fzcs0fn6bb04m82frhlb78nc03ny3w55-binutils-2.28.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin
patching script interpreter paths in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/share/.cytoscape.sh-wrapped: interpreter directive changed from "/bin/bash" to "/nix/store/q1g0rl8zfmz7r371fp5p42p4acmv297d-bash-4.4-p19/bin/bash"
/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/share/framework/bin/karaf: interpreter directive changed from "/bin/sh" to "/nix/store/q1g0rl8zfmz7r371fp5p42p4acmv297d-bash-4.4-p19/bin/sh"
/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/share/gen_vmoptions.sh: interpreter directive changed from "/bin/sh" to "/nix/store/q1g0rl8zfmz7r371fp5p42p4acmv297d-bash-4.4-p19/bin/sh"
checking for references to /tmp/nix-build-cytoscape-3.6.1.drv-0 in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1...

@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: cytoscape

Partial log (click to expand)

'sampleData/galFiltered.nodeAttrTable.xlsx' -> '/nix/store/p0pqsqrg82x6ny1wvqg9pg9c8ysb5jvk-cytoscape-3.6.1/share/sampleData/galFiltered.nodeAttrTable.xlsx'
'sampleData/galFiltered.sif' -> '/nix/store/p0pqsqrg82x6ny1wvqg9pg9c8ysb5jvk-cytoscape-3.6.1/share/sampleData/galFiltered.sif'
post-installation fixup
strip is /nix/store/0fzpxnsanc02i4jsb1yhchjp4p62b2n3-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/p0pqsqrg82x6ny1wvqg9pg9c8ysb5jvk-cytoscape-3.6.1/bin
patching script interpreter paths in /nix/store/p0pqsqrg82x6ny1wvqg9pg9c8ysb5jvk-cytoscape-3.6.1
/nix/store/p0pqsqrg82x6ny1wvqg9pg9c8ysb5jvk-cytoscape-3.6.1/share/framework/bin/karaf: interpreter directive changed from "/bin/sh" to "/nix/store/x030a63qdilnv02pkivfjg44pdxsh5km-bash-4.4-p19/bin/sh"
/nix/store/p0pqsqrg82x6ny1wvqg9pg9c8ysb5jvk-cytoscape-3.6.1/share/.cytoscape.sh-wrapped: interpreter directive changed from "/bin/bash" to "/nix/store/x030a63qdilnv02pkivfjg44pdxsh5km-bash-4.4-p19/bin/bash"
/nix/store/p0pqsqrg82x6ny1wvqg9pg9c8ysb5jvk-cytoscape-3.6.1/share/gen_vmoptions.sh: interpreter directive changed from "/bin/sh" to "/nix/store/x030a63qdilnv02pkivfjg44pdxsh5km-bash-4.4-p19/bin/sh"
/nix/store/p0pqsqrg82x6ny1wvqg9pg9c8ysb5jvk-cytoscape-3.6.1

@matthewbauer matthewbauer merged commit 853529b into NixOS:master Apr 19, 2018
@r-ryantm r-ryantm deleted the auto-update/cytoscape branch April 19, 2018 04:29
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