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Commits on Apr 24, 2016

• Release 1.5.13.

  johnmay

  committedApr 24, 2016
  0b6b19d

• Correct scaling of reaction conditions.

  johnmay

  committedApr 24, 2016
  61389d5

Commits on Apr 21, 2016

• Merge pull request #201 from cdk/testFixes_20160418

  egonw

  committedApr 21, 2016
  a54f853

• Merge pull request #200 from cdk/patch/cxsmiles-read

  egonw

  committedApr 21, 2016
  18639d9

Commits on Apr 18, 2016

• Resolving failing unit test, hidx needs to check i,j (local index) nor a,b (labels).

  johnmay

  committedApr 18, 2016
  ceaa623

• Additional centering of agents when arrow is small and has conditions.

  johnmay

  committedApr 18, 2016
  937f107

• Unescape Data Sgroup field and allow early termination.

  johnmay

  committedApr 18, 2016
  99f911f

• Make it possible to draw reaction conditions bellow the arrow of a reaction. We use a new property which is picked up during the depiction generation. Some minor tweaks were made to sizing calculat…

  johnmay

  committedApr 18, 2016
  7b456eb

• Read Data Sgroups.

  johnmay

  committedApr 18, 2016
  e66110e

Commits on Apr 11, 2016

• Minor tweak, when checking minimum arrow length account the the size of the arrow head.

  johnmay

  committedApr 11, 2016
  42c229e

• Handling highlighting with contracted abbreviations.

  johnmay

  committedApr 11, 2016
  611e055

Commits on Mar 29, 2016

• Handling marshalling from CXSMILES state to the CDK data-structures.

  johnmay

  committedMar 29, 2016
  7b05e55

• Preliminary parsing and representation of CXSMILES.

  johnmay

  committedMar 29, 2016
  fb8d137

Commits on Mar 25, 2016

• Safe null unbox.

  johnmay

  committedMar 25, 2016
  4ac88d4

Commits on Mar 11, 2016

• Merge pull request #199 from cdk/legacy/deprecate-mdlreader

  egonw

  committedMar 11, 2016
  a07f829

• Deprecate MDLReader to avoid confusion.

  johnmay

  committedMar 11, 2016
  88f576b

Commits on Feb 23, 2016

• When selecting rotation, check if the molecule has an attachment point.

  johnmay

  committedFeb 23, 2016
  6507edf

• Shuffle around where stereo assignment is done so it doesn't consider any ionic bonds we temporarily add in..

  johnmay

  committedFeb 23, 2016
  9e40edd

• Slightly better check for laying out co-linear chains. Useful for cumulenes and azides.

  johnmay

  committedFeb 23, 2016
  e79cc4f

• Improved cumulated bond depiction by restricting when we offset double bonds.

  johnmay

  committedFeb 23, 2016
  7190b0d

Commits on Feb 22, 2016

• Merge pull request #198 from cdk/patch/mdlpartiy

  egonw

  committedFeb 22, 2016
  0f8d3cb

• Use atom index instead of linear scan.

  johnmay

  committedFeb 22, 2016
  d5a6914

• Write 0D tetrahedral stereochemistry.

  johnmay

  committedFeb 22, 2016
  5b1ab1a

• Deprecate stereo parity property on atom. Existing code can continue to use it but it is not the prefered method.

  johnmay

  committedFeb 22, 2016
  312e836

Commits on Feb 21, 2016

• Don't ever show 'ht' superscript.

  johnmay

  committedFeb 21, 2016
  fa571c3

• Improved single atom bracket aesthetics.

  johnmay

  committedFeb 21, 2016
  97597e9

• Abbreviation generate through fragmentation (cuts) rather than SMARTS patterns.

  johnmay

  committedFeb 21, 2016
  ec56b9c

Commits on Feb 20, 2016

• New separate API for pseudo atoms vs abbreviations.

  johnmay

  committedFeb 20, 2016
  250e70b

• Line of the arrow should be the foreground color.

  johnmay

  committedFeb 20, 2016
  4b5c439

Commits on Feb 16, 2016

• Merge pull request #196 from tomas-pluskal/master

  johnmay

  committedFeb 16, 2016
  30e8d67

• Removed the nonsense isNotZero() method

  tomas-pluskal

  committedFeb 16, 2016
  80ba80c

• Patched a bug in IsotopePatternGenerator

  tomas-pluskal

  committedFeb 16, 2016
  df1c2f7

Commits on Feb 13, 2016

• Improve arrow aesthetics and avoid making tiny arrows.

  

  johnmay

  authored and

  egonw

  committedFeb 13, 2016
  eb79e25

• Improved generic label formatting, superscript numbers/primes and make labels italic. This allows clear distinction between the substituent list 'W' and 'Tungsten'.

  

  johnmay

  authored and

  egonw

  committedFeb 13, 2016
  177e84c

• Sulphur is a little too bright.

  

  johnmay

  authored and

  egonw

  committedFeb 13, 2016
  23041fc

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