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R: update to 3.5.0 (and update package set) #39382

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merged 2 commits into from Apr 24, 2018
Merged

R: update to 3.5.0 (and update package set) #39382

merged 2 commits into from Apr 24, 2018

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peti
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@peti peti commented Apr 23, 2018

@peti peti self-assigned this Apr 23, 2018
@peti
R: 3.4.4 -> 3.5.0
6799fcb 
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
@peti
R: update CRAN and BIOC package sets
94295e3
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peti commented Apr 24, 2018

@grahamc build rPackages.data_table

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peti commented Apr 24, 2018

@GrahamcOfBorg build rPackages.data_table

Sorry, @grahamc, I pinged the wrong copy of you in my previous message. :-)

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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: rPackages.data_table

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.

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Success on x86_64-linux (full log)

Attempted: rPackages.data_table

Partial log (click to expand)

** installing vignettes
** testing if installed package can be loaded
* DONE (data.table)
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/qfn4z3kv5fbb44iz6hrwzc0hxr2yr3jy-r-data.table-1.10.4-3
shrinking /nix/store/qfn4z3kv5fbb44iz6hrwzc0hxr2yr3jy-r-data.table-1.10.4-3/library/data.table/libs/datatable.so
strip is /nix/store/j75dgadrff2d1fyc4fczmcgqkid2imdx-binutils-2.30/bin/strip
patching script interpreter paths in /nix/store/qfn4z3kv5fbb44iz6hrwzc0hxr2yr3jy-r-data.table-1.10.4-3
checking for references to /build in /nix/store/qfn4z3kv5fbb44iz6hrwzc0hxr2yr3jy-r-data.table-1.10.4-3...
/nix/store/qfn4z3kv5fbb44iz6hrwzc0hxr2yr3jy-r-data.table-1.10.4-3

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Success on x86_64-darwin (full log)

Attempted: rPackages.data_table

Partial log (click to expand)

** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (data.table)
post-installation fixup
strip is /nix/store/kdff2gim6417493yha769kh00n63lnrw-cctools-binutils-darwin/bin/strip
patching script interpreter paths in /nix/store/pagc6v0hihk5y0k6licc4hgqwlivyyry-r-data.table-1.10.4-3
/nix/store/pagc6v0hihk5y0k6licc4hgqwlivyyry-r-data.table-1.10.4-3

@peti peti merged commit 9f816ed into NixOS:master Apr 24, 2018
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0.kind: enhancement 2.status: work-in-progress 8.has: package (update) 10.rebuild-darwin: 1-10 10.rebuild-linux: 11-100
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