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gromacs: 2018 -> 2018.1 #41689

Merged
merged 1 commit into from Jun 8, 2018
Merged

gromacs: 2018 -> 2018.1 #41689

merged 1 commit into from Jun 8, 2018

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r-ryantm
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@r-ryantm r-ryantm commented Jun 8, 2018

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gromacs/versions.

These checks were done:

  • built on NixOS
  • Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC had a zero exit code or showed the expected version
  • /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.bash passed the binary check.
  • /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.zsh passed the binary check.
  • Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.csh had a zero exit code or showed the expected version
  • Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/demux.pl had a zero exit code or showed the expected version
  • Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/xplor2gmx.pl had a zero exit code or showed the expected version
  • Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx-completion.bash had a zero exit code or showed the expected version
  • Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx-completion-gmx.bash had a zero exit code or showed the expected version
  • /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx passed the binary check.
  • 3 of 9 passed binary check by having a zero exit code.
  • 0 of 9 passed binary check by having the new version present in output.
  • found 2018.1 with grep in /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1
  • directory tree listing: https://gist.github.com/4d089bde03168c17ad10db514f47d339
  • du listing: https://gist.github.com/5dd10f02ed60d442ec148efcf18c7661

meta.description for gromacs is: '"Molecular dynamics software package"'.

Experimental: this build is cached with Cachix. To use the cache follow these experimental instructions:

One time setup in nixpkgs Git checkout:

cachix use r-ryantm
git remote add r-ryantm https://github.com/r-ryantm/nixpkgs.git

Test this build:

git fetch r-ryantm && git checkout bab8aee740f539b098b6d3e7b0180e180def4345 && nix-shell --pure -I nixpkgs=. -p gromacs

gromacs: 2018 -> 2018.1
bab8aee 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gromacs/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC had a zero exit code or showed the expected version
- /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.bash passed the binary check.
- /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.zsh passed the binary check.
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.csh had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/demux.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/xplor2gmx.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx-completion.bash had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx-completion-gmx.bash had a zero exit code or showed the expected version
- /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx passed the binary check.
- 3 of 9 passed binary check by having a zero exit code.
- 0 of 9 passed binary check by having the new version present in output.
- found 2018.1 with grep in /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1
- directory tree listing: https://gist.github.com/4d089bde03168c17ad10db514f47d339
- du listing: https://gist.github.com/5dd10f02ed60d442ec148efcf18c7661
@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: gromacs

Partial log (click to expand)

-- Installing: /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1/bin/gmx-completion-gmx.bash
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1
shrinking /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1/bin/gmx
shrinking /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1/lib/libgromacs.so.3.1.0
gzipping man pages under /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1/share/man/
strip is /nix/store/21ymadblbmsbb2bk4q7gl4kjasp8zmgd-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1/lib  /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1/bin
patching script interpreter paths in /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1
checking for references to /build in /nix/store/0ssbq8lif7a19mxksh63w1psr1pai4ab-gromacs-2018.1...

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Success on aarch64-linux (full log)

Attempted: gromacs

Partial log (click to expand)

-- Installing: /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1/bin/gmx-completion-gmx.bash
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1
shrinking /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1/lib/libgromacs.so.3.1.0
shrinking /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1/bin/gmx
gzipping man pages under /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1/share/man/
strip is /nix/store/qg2agrqkf240s656d207zqhipl0bc2id-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1/lib  /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1/bin
patching script interpreter paths in /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1
checking for references to /build in /nix/store/jg86la7h03cvn1x222yjnmgsl0z7jg78-gromacs-2018.1...

@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: gromacs

Partial log (click to expand)

-- Installing: /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1/include/gromacs/trajectoryanalysis/cmdlinerunner.h
-- Installing: /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1/bin/gmx
-- Up-to-date: /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1/bin
-- Installing: /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1/bin/gmx-completion.bash
-- Installing: /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1/bin/gmx-completion-gmx.bash
post-installation fixup
gzipping man pages under /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1/share/man/
strip is /nix/store/yyak5sjv68n9vdgnkd2cb5djk1l9sqj5-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1/lib  /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1/bin
patching script interpreter paths in /nix/store/jgxj5msasaybhzdp6zkx6sizx0xiv29v-gromacs-2018.1

@Mic92 Mic92 merged commit 2e26c11 into NixOS:master Jun 8, 2018
@r-ryantm r-ryantm deleted the auto-update/gromacs branch June 8, 2018 17:02
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