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snpeff: 4.3p -> 4.3t #32913

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merged 1 commit into from Dec 20, 2017
Merged

snpeff: 4.3p -> 4.3t #32913

merged 1 commit into from Dec 20, 2017

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jbedo
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@jbedo jbedo commented Dec 20, 2017

Motivation for this change

Update snpEff to latest version.

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option build-use-sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Fits CONTRIBUTING.md.

@@ -2,11 +2,11 @@

stdenv.mkDerivation rec {
name = "snpeff-${version}";
version = "4.3p";
version = "4.3T";
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snpeff --help refers to itself as snpEff version SnpEff 4.3t (build 2017-11-24 10:18), by Pablo Cingolani, so maybe you should keep it lowercase?

@jbedo jbedo changed the title snpeff: 4.3p -> 4.3T snpeff: 4.3p -> 4.3t Dec 20, 2017
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jbedo commented Dec 20, 2017

It's a little inconsistent with the capitalisation (webpage has capital T and some other output messages also contain capital T), but yeah if -version is giving lowercase then we should stick to that.

@orivej orivej merged commit 073c403 into NixOS:master Dec 20, 2017
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orivej commented Dec 21, 2017

Thank you!

@jbedo jbedo deleted the snpeff branch December 21, 2017 00:01
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2 participants