Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

picard-tools: 2.7.1 -> 2.17.4 #34140

Merged
merged 1 commit into from Jan 22, 2018
Merged

picard-tools: 2.7.1 -> 2.17.4 #34140

merged 1 commit into from Jan 22, 2018

Conversation

arcadio
Copy link
Contributor

@arcadio arcadio commented Jan 22, 2018

Motivation for this change

Upgrade picard-tools to latest stable release.

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option build-use-sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Fits CONTRIBUTING.md.

@jbedo

@adisbladis
Copy link
Member

@GrahamcOfBorg build picard-tools

Copy link

@GrahamcOfBorg GrahamcOfBorg left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Success for system: x86_64-darwin

copying path '/nix/store/fi9nyzxcmvhmf23r0aigznll1fi97jqp-zulu1.8.0_121-8.20.0.5' from 'https://cache.nixos.org'...

trying https://github.com/broadinstitute/picard/releases/download/2.17.4/picard.jar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   600    0   600    0     0    600      0 --:--:-- --:--:-- --:--:--  1001
100 12.6M  100 12.6M    0     0  4304k      0  0:00:03  0:00:03 --:--:-- 6827k
building '/nix/store/dwfn5wl8lnyfbj26w3zl68116mdxc4m6-picard-tools-2.17.4.drv'...
installing
/nix/store/ij7avyv2cs3ps08a35l3p8ba0jxvdavk-picard-tools-2.17.4

Copy link

@GrahamcOfBorg GrahamcOfBorg left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Success for system: x86_64-linux

fetching path ‘/nix/store/m0jsrwn8jd4i7xx1hx5yr6fhdqvqgbyv-openjdk-8u172b02-jre’...

*** Downloading ‘https://nix-cache.s3.amazonaws.com/nar/1s464dq8iwdcl1gh8pnrlpx9zp48dxl79n017l2svbl6dv90n4y2.nar.xz’ (signed by ‘cache.nixos.org-1’) to ‘/nix/store/m0jsrwn8jd4i7xx1hx5yr6fhdqvqgbyv-openjdk-8u172b02-jre’...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  5 25.9M    5 1405k    0     0  1405k      0  0:00:18 --:--:--  0:00:18 3622k
 45 25.9M   45 11.7M    0     0  11.7M      0  0:00:02  0:00:01  0:00:01 8691k
 81 25.9M   81 21.1M    0     0  10.5M      0  0:00:02  0:00:02 --:--:-- 9056k
100 25.9M  100 25.9M    0     0  12.9M      0  0:00:02  0:00:02 --:--:-- 9185k

building path(s) ‘/nix/store/13d4la2kql6yk209xpcjc8l3viynf6l6-picard-tools-2.17.4’
installing
/nix/store/13d4la2kql6yk209xpcjc8l3viynf6l6-picard-tools-2.17.4

@adisbladis adisbladis merged commit 7490d4d into NixOS:master Jan 22, 2018
Copy link

@GrahamcOfBorg GrahamcOfBorg left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Failure for system: aarch64-linux

error: while evaluating the attribute 'buildInputs' of the derivation 'picard-tools-2.17.4' at /var/lib/gc-of-borg/nix-test-rs-3/repo/38dca4e3aa6bca43ea96d2fcc04e8229/builder/grahamc-aarch64-community-3/pkgs/stdenv/generic/make-derivation.nix:148:11:
while evaluating the attribute 'buildInputs' of the derivation 'openjdk-8u172b02' at /var/lib/gc-of-borg/nix-test-rs-3/repo/38dca4e3aa6bca43ea96d2fcc04e8229/builder/grahamc-aarch64-community-3/pkgs/stdenv/generic/make-derivation.nix:148:11:
while evaluating the attribute 'buildCommand' of the derivation 'openjdk-bootstrap' at /var/lib/gc-of-borg/nix-test-rs-3/repo/38dca4e3aa6bca43ea96d2fcc04e8229/builder/grahamc-aarch64-community-3/pkgs/stdenv/generic/make-derivation.nix:148:11:
No bootstrap for system

@arcadio arcadio deleted the picard branch May 14, 2018 19:21
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

3 participants