bowtie2: 2.3.3.1 -> 2.3.4 #34141
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bowtie2: 2.3.3.1 -> 2.3.4 #34141
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@GrahamcOfBorg build bowtie2 |
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Success for system: x86_64-darwin
/nix/store/4cvvpbqdkrb0hr4p47q3s9l2a6k04y1g-bash-4.4-p12/bin/bash: which: command not found
mkdir -p /nix/store/lpnwvb7lnpaaksf999hh2bkr51zh8n5n-bowtie2-2.3.4/bin
for file in bowtie2-build-s bowtie2-build-l bowtie2-align-s bowtie2-align-l bowtie2-inspect-s bowtie2-inspect-l bowtie2-inspect bowtie2-build bowtie2 ; do \
cp -f $file /nix/store/lpnwvb7lnpaaksf999hh2bkr51zh8n5n-bowtie2-2.3.4/bin ; \
done
post-installation fixup
strip is /nix/store/i1zz228nl3bljcbb83fq0rq7lr7nvv4y-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/lpnwvb7lnpaaksf999hh2bkr51zh8n5n-bowtie2-2.3.4/bin
patching script interpreter paths in /nix/store/lpnwvb7lnpaaksf999hh2bkr51zh8n5n-bowtie2-2.3.4
/nix/store/lpnwvb7lnpaaksf999hh2bkr51zh8n5n-bowtie2-2.3.4
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Success for system: x86_64-linux
shrinking /nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4/bin/bowtie2-inspect-l
shrinking /nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4/bin/bowtie2-build-s
shrinking /nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4/bin/bowtie2-align-l
shrinking /nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4/bin/bowtie2-inspect-s
shrinking /nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4/bin/bowtie2-build-l
strip is /nix/store/mdyy001q67hiks0g24ra53z7ckm4jfr4-binutils-2.28.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4/bin
patching script interpreter paths in /nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4
checking for references to /tmp/nix-build-bowtie2-2.3.4.drv-0 in /nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4...
/nix/store/fhbj6a1rvrf7n2fzr8851q3a97316w26-bowtie2-2.3.4
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Failure for system: aarch64-linux
configuring
no configure script, doing nothing
building
build flags: SHELL=/nix/store/rc78viijga8i0m4imrnqk8d1csyqr8yx-bash-4.4-p12/bin/bash
/nix/store/rc78viijga8i0m4imrnqk8d1csyqr8yx-bash-4.4-p12/bin/bash: which: command not found
dirname: missing operand
Try 'dirname --help' for more information.
Makefile:184: *** bowtie2 compilation requires a 64-bit platform . Stop.
builder for '/nix/store/lgfc3pd4lg2dfs4bz51jxbkk9amyly6f-bowtie2-2.3.4.drv' failed with exit code 2
error: build of '/nix/store/lgfc3pd4lg2dfs4bz51jxbkk9amyly6f-bowtie2-2.3.4.drv' failed
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Motivation for this change
Upgrade bowtie2 to latest stable release.
Things done
build-use-sandboxinnix.confon non-NixOS)nix-shell -p nox --run "nox-review wip"./result/bin/)@rybern