muscle: init at 3.8.31 #34334
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muscle: init at 3.8.31 #34334
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@GrahamcOfBorg build muscle |
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Failure for system: x86_64-linux
configuring
no configure script, doing nothing
building
build flags: SHELL=/nix/store/i0ay05pqkbnvpfijm52mmlrp6kmkl80c-bash-4.4-p12/bin/bash
chmod +x ./mk
./mk
/nix/store/i0ay05pqkbnvpfijm52mmlrp6kmkl80c-bash-4.4-p12/bin/bash: ./mk: /bin/bash: bad interpreter: No such file or directory
make: *** [Makefile:3: muscle] Error 126
builder for ‘/nix/store/wq8ir3v8dsxb8dp278ncdi3pwc8kiq7h-muscle-3.8.31.drv’ failed with exit code 2
error: build of ‘/nix/store/wq8ir3v8dsxb8dp278ncdi3pwc8kiq7h-muscle-3.8.31.drv’ failed
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Failure for system: aarch64-linux
configuring
no configure script, doing nothing
building
build flags: SHELL=/nix/store/rc78viijga8i0m4imrnqk8d1csyqr8yx-bash-4.4-p12/bin/bash
chmod +x ./mk
./mk
/nix/store/rc78viijga8i0m4imrnqk8d1csyqr8yx-bash-4.4-p12/bin/bash: ./mk: /bin/bash: bad interpreter: No such file or directory
make: *** [Makefile:3: muscle] Error 126
builder for '/nix/store/aaj954spib19bc2swpjr2ff7bx92i0bh-muscle-3.8.31.drv' failed with exit code 2
error: build of '/nix/store/aaj954spib19bc2swpjr2ff7bx92i0bh-muscle-3.8.31.drv' failed
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Failure for system: x86_64-darwin
./mk: line 9: g++: command not found
./mk: line 9: g++: command not found
./mk: line 9: g++: command not found
./mk: line 16: g++: command not found
error: strip: can't open file: muscle (No such file or directory)
ls: cannot access 'muscle': No such file or directory
sum: muscle: No such file or directory
make: *** [Makefile:3: muscle] Error 1
builder for '/nix/store/mg4z3f618kza3f79rh3marx4rzmb75rg-muscle-3.8.31.drv' failed with exit code 2
error: build of '/nix/store/mg4z3f618kza3f79rh3marx4rzmb75rg-muscle-3.8.31.drv' failed
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Looks like there's some shebangs that need patching. There's no |
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Patched and built with sandbox. Not tested on NixOS yet. |
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Also not entirely sure how to handle darwin. No experience with that. |
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@GrahamcOfBorg build muscle |
1 similar comment
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@GrahamcOfBorg build muscle |
There was a problem hiding this comment.
Failure for system: x86_64-darwin
./mk: line 9: g++: command not found
./mk: line 9: g++: command not found
./mk: line 9: g++: command not found
./mk: line 16: g++: command not found
error: strip: can't open file: muscle (No such file or directory)
ls: cannot access 'muscle': No such file or directory
sum: muscle: No such file or directory
make: *** [Makefile:3: muscle] Error 1
builder for '/nix/store/3khv5ypx9h463vv7yx0wxadjk4rh70zk-muscle-3.8.31.drv' failed with exit code 2
error: build of '/nix/store/3khv5ypx9h463vv7yx0wxadjk4rh70zk-muscle-3.8.31.drv' failed
There was a problem hiding this comment.
Failure for system: aarch64-linux
g++: error: usage.o: No such file or directory
g++: error: validateids.o: No such file or directory
g++: error: vtml2.o: No such file or directory
g++: error: writescorefile.o: No such file or directory
strip: 'muscle': No such file
ls: cannot access 'muscle': No such file or directory
sum: muscle: No such file or directory
make: *** [Makefile:3: muscle] Error 1
builder for '/nix/store/4vbx5aabvr1bpk159hjvcq5l26jcxsm3-muscle-3.8.31.drv' failed with exit code 2
error: build of '/nix/store/4vbx5aabvr1bpk159hjvcq5l26jcxsm3-muscle-3.8.31.drv' failed
There was a problem hiding this comment.
Success for system: x86_64-linux
install: creating directory '/nix/store/7vzw4ccqn1rmqf802mq28k2zfv1sf47d-muscle-3.8.31/bin'
'muscle' -> '/nix/store/7vzw4ccqn1rmqf802mq28k2zfv1sf47d-muscle-3.8.31/bin/muscle'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/7vzw4ccqn1rmqf802mq28k2zfv1sf47d-muscle-3.8.31
shrinking /nix/store/7vzw4ccqn1rmqf802mq28k2zfv1sf47d-muscle-3.8.31/bin/muscle
strip is /nix/store/mdyy001q67hiks0g24ra53z7ckm4jfr4-binutils-2.28.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/7vzw4ccqn1rmqf802mq28k2zfv1sf47d-muscle-3.8.31/bin
patching script interpreter paths in /nix/store/7vzw4ccqn1rmqf802mq28k2zfv1sf47d-muscle-3.8.31
checking for references to /tmp/nix-build-muscle-3.8.31.drv-0 in /nix/store/7vzw4ccqn1rmqf802mq28k2zfv1sf47d-muscle-3.8.31...
/nix/store/7vzw4ccqn1rmqf802mq28k2zfv1sf47d-muscle-3.8.31
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I guess a |
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By the way, you can request access to ofborg here: NixOS/ofborg#22 |
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This package is supposed to be compatible with MacOS both Intel and PPC but I guess this needs further testing. |
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Looks good to me. Ready for merge? |
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Just waiting on checks. Other than that 👍 |
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Thanks! |
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Using |
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Motivation for this change
Introduces MUSCLE, a commonly used bioinformatics tool for multiple sequence alignments.
Things done
build-use-sandboxinnix.confon non-NixOS)nix-shell -p nox --run "nox-review wip"./result/bin/)