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mrtrix3: init at 0.3.16 #33892

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ashgillman
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@ashgillman ashgillman commented Jan 15, 2018

Motivation for this change

Add MRTrix3

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option build-use-sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Fits CONTRIBUTING.md.

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veprbl Dmitry Kalinkin

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Ma27 Maximilian Bosch
@GrahamcOfBorg GrahamcOfBorg added 10.rebuild-darwin: 0 This PR does not cause any packages to rebuild on Darwin 10.rebuild-linux: 1-10 10.rebuild-darwin: 1-10 and removed 10.rebuild-darwin: 0 This PR does not cause any packages to rebuild on Darwin labels Jan 15, 2018

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Ma27 Maximilian Bosch
Needed for sandbox build.
@ashgillman
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Not sure of an appropriate reviewer, perhaps @ttuegel as I am unsure I have correctly assigned qt dependencies as buildInputs vs. nativeBuildInputs.

@@ -18870,6 +18870,8 @@ with pkgs;

mrbayes = callPackage ../applications/science/biology/mrbayes { };

mrtrix3 = callPackage ../applications/science/biology/mrtrix { };
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You should use qt56.callPackage here instead of callPackage.

};

nativeBuildInputs = [
qt56.qmake
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You can remove the qt56. prefix from qmake, qtscript, and qtsvg.


nativeBuildInputs = [
qt56.qmake
qt56.qtscript
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qmake is a nativeBuildInput because it is a build tool, but qtscript is a runtime dependency that should go in buildInputs.

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Ma27 Maximilian Bosch

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Ma27 Maximilian Bosch

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Ma27 Maximilian Bosch
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Thanks for the review. I have made all suggested changes.

I also created a new category: science/imaging. If accepted, I will make a new PR to move science/biology/ants to science/imaging/ants also, as it is a more appropriate classification. I also have some other packages to contribute upstream that would belong there.

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Tried to merge — a strange build problem about operator []

@samueldr samueldr added the 2.status: merge conflict This PR has merge conflicts with the target branch label Nov 11, 2018
@infinisil infinisil added the 8.has: package (new) This PR adds a new package label Mar 30, 2019
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bcdarwin commented Apr 3, 2020

mrtrix was added in #80292.

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Looks better to me, thanks @bcdarwin

@ashgillman ashgillman closed this Apr 6, 2020
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2.status: merge conflict This PR has merge conflicts with the target branch 8.has: package (new) This PR adds a new package 10.rebuild-darwin: 1-10 10.rebuild-linux: 1-10
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7 participants