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bwa: 0.7.16a -> 0.7.17 #34125

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merged 1 commit into from Jan 23, 2018
Merged

bwa: 0.7.16a -> 0.7.17 #34125

merged 1 commit into from Jan 23, 2018

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arcadio
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@arcadio arcadio commented Jan 22, 2018

Motivation for this change

Upgrade bwa to the latest stable release.

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option build-use-sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Fits CONTRIBUTING.md.

@luispedro

@grahamc
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grahamc commented Jan 22, 2018

@GrahamcOfBorg build bwa

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Failure for system: aarch64-linux

Package ‘bwa-0.7.17’ in /var/lib/gc-of-borg/nix-test-rs-3/repo/38dca4e3aa6bca43ea96d2fcc04e8229/builder/grahamc-aarch64-community-3/pkgs/applications/science/biology/bwa/default.nix:19 is not supported on ‘aarch64-linux’, refusing to evaluate.

a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowBroken = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowBroken = true; }
to ~/.config/nixpkgs/config.nix.

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Success for system: x86_64-linux

install: creating directory '/nix/store/kmxahsizfzm65pwrkkzrdbb80p8f81df-bwa-0.7.17/bin'
'bwa' -> '/nix/store/kmxahsizfzm65pwrkkzrdbb80p8f81df-bwa-0.7.17/bin/bwa'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/kmxahsizfzm65pwrkkzrdbb80p8f81df-bwa-0.7.17
shrinking /nix/store/kmxahsizfzm65pwrkkzrdbb80p8f81df-bwa-0.7.17/bin/bwa
strip is /nix/store/mdyy001q67hiks0g24ra53z7ckm4jfr4-binutils-2.28.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/kmxahsizfzm65pwrkkzrdbb80p8f81df-bwa-0.7.17/bin 
patching script interpreter paths in /nix/store/kmxahsizfzm65pwrkkzrdbb80p8f81df-bwa-0.7.17
checking for references to /tmp/nix-build-bwa-0.7.17.drv-0 in /nix/store/kmxahsizfzm65pwrkkzrdbb80p8f81df-bwa-0.7.17...
/nix/store/kmxahsizfzm65pwrkkzrdbb80p8f81df-bwa-0.7.17

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Failure for system: x86_64-darwin

Package ‘bwa-0.7.17’ in /Users/graham/nix-borg/repo/38dca4e3aa6bca43ea96d2fcc04e8229/builder/grahamc-zoidberg/pkgs/applications/science/biology/bwa/default.nix:19 is not supported on ‘x86_64-darwin’, refusing to evaluate.

a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowBroken = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowBroken = true; }
to ~/.config/nixpkgs/config.nix.

@adisbladis adisbladis merged commit 266979a into NixOS:master Jan 23, 2018
@arcadio arcadio deleted the bwa branch May 14, 2018 19:21
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4 participants