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Commits on May 25, 2017

• Version 2.0

  johnmay

  committedMay 25, 2017
  e21f12f

• Merge pull request #325 from cdk/patch/interfaces

  egonw

  committedMay 25, 2017
  d6cdc25

• Merge pull request #327 from cdk/patch/setAtom

  egonw

  committedMay 25, 2017
  da1489f

Commits on May 24, 2017

• An atom may be involved in multiple stereo elements... when we replace it we much replace all of them.

  johnmay

  committedMay 24, 2017
  85399ad

• Reproducible test case.

  johnmay

  committedMay 24, 2017
  627b12d

Commits on May 21, 2017

• Fix brittle test (string compare of class name - String contents accidentally renamed by IDE).

  johnmay

  committedMay 21, 2017
  2262ec1

• Move IO interfaces to cdk-interfaces, ReaderEvent also need to move.

  johnmay

  committedMay 21, 2017
  2771079

• Move ioformats interfaces to cdk-interfaces.

  johnmay

  committedMay 21, 2017
  5165b67

• Unused imports.

  johnmay

  committedMay 21, 2017
  d1720eb

• Move exceptions from core/standard to interfaces. Although not strictly interfaces they appear in the method signature.

  johnmay

  committedMay 21, 2017
  94cf1d1

Commits on May 20, 2017

• Merge pull request #324 from cdk/patch/runtimeexception

  egonw

  committedMay 20, 2017
  794419e

• Make NoSuchAtomException a RuntimeException rather than a CDKException

  johnmay

  committedMay 20, 2017
  ecc280d

• Revert "Make CDKException a RuntimeException."

  johnmay

  committedMay 20, 2017
  097fdce

Commits on May 18, 2017

• Merge pull request #323 from cdk/patch/equals

  egonw

  committedMay 18, 2017
  11b34a3

• Merge pull request #322 from cdk/findbugs

  egonw

  committedMay 18, 2017
  1ecebf6

Commits on May 17, 2017

• Replace reference compare on boxed primitives. There are some equality checks on floating points that probably don't make sense, the code will likely work fine as most (e.g. isotope mass) are const…

  johnmay

  committedMay 17, 2017
  bf3ee73

• Replace IBond ref compares.

  johnmay

  committedMay 17, 2017
  cd54e43

• Replace IAtom reference equality checks.

  johnmay

  committedMay 17, 2017
  76d03d7

Commits on May 16, 2017

• If clone fails (which it won't - IAtomContainer should not have declared the exception thrown) then trail is null.. and we'll have NPE within the mutate(trial) call. This is better handled with an …

  johnmay

  committedMay 16, 2017
  d56977d

Commits on May 15, 2017

• Masked field in super class.

  johnmay

  committedMay 15, 2017
  02f82da

• Can't find indexOf(String) in a List<IElement>

  johnmay

  committedMay 15, 2017
  1ef1743

• Fix incompatible object compares.

  johnmay

  committedMay 15, 2017
  96c2b41

Commits on May 14, 2017

• Added a new author to this file too

  egonw

  committedMay 14, 2017
  9779b93

• Merge pull request #321 from cdk/cleanup/AtomContainer

  egonw

  committedMay 14, 2017
  f2274f2

Commits on May 13, 2017

• Merge pull request #319 from cdk/patch/radicalBugs

  egonw

  committedMay 13, 2017
  780ee9e

Commits on May 7, 2017

• Added Kazuya Ujihara as contributor

  egonw

  committedMay 7, 2017
  4bd80d3

• Merge pull request #318 from cdk/runtimeException

  egonw

  committedMay 7, 2017
  a5fe4b4

• Replace deprecated getConnectedAtomsCount usage.

  johnmay

  committedMay 7, 2017
  abf7bd7

• Merge pull request #316 from cdk/patch/cleanup_20170503

  egonw

  committedMay 7, 2017
  5c43a9f

• Merge pull request #312 from cdk/patch/extra-decouple

  egonw

  committedMay 7, 2017
  10c6453

• Regression - the handling of fragments and positional variation means we can no longer to the quick circuit rank calculation. Also ensure molecule is rolled back correctly.

  johnmay

  committedMay 7, 2017
  fc36744

• Regression - Simplify behaviour and correct logic, we only need to check connectivity in non-exclusion containers.

  johnmay

  committedMay 7, 2017
  b802637

• Regression - Simple mistypes copy/pasted.

  johnmay

  committedMay 7, 2017
  3a6cb8c

• Regression - test should actually add the atom to the container.

  johnmay

  committedMay 7, 2017
  b97c010

• Regression - Using source/reatant, target/product.

  johnmay

  committedMay 7, 2017
  f75d5d2

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