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vcftools: init at 0.1.15 #31339

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merged 2 commits into from Nov 16, 2017
Merged

vcftools: init at 0.1.15 #31339

merged 2 commits into from Nov 16, 2017

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rybern
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@rybern rybern commented Nov 6, 2017

Motivation for this change
Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option build-use-sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Fits CONTRIBUTING.md.

sha256 = "15yxr4kidqb42gkbd6rjra6b07wpl6rgivlh9q73yavh5myafqk4";
};

buildInputs = [ stdenv autoreconfHook gcc pkgconfig zlib perl ];
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@dezgeg dezgeg Nov 7, 2017

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Mentioning stdenv or gcc here should be unnecessary.

@dezgeg
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dezgeg commented Nov 7, 2017

Besides the one comment, looks good.

description = "A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project";
license = licenses.lgpl3;
homepage = https://vcftools.github.io/index.html;
maintainers = [ maintainers.rybern ];
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Add platforms = platforms.linux; here (or in case you tested on MacOS as well, platforms.unix).

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rybern commented Nov 7, 2017

@dezgeg Thanks, applied changes

sha256 = "15yxr4kidqb42gkbd6rjra6b07wpl6rgivlh9q73yavh5myafqk4";
};

buildInputs = [ autoreconfHook pkgconfig zlib perl ];
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- buildInputs = [ autoreconfHook pkgconfig zlib perl ];
+ buildInputs = [ zlib perl ];
+ nativeBuildInputs = [ autoreconfHook pkgconfig ];

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Cool - I found the GitHub issue describing the difference, but I'm not clear on how I would know which input goes where

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Everything that is used to build the project but does not end up being linked against. In doubt reviewer can also fix that.

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rybern commented Nov 16, 2017

@dezgeg ready to merge?

@dezgeg dezgeg merged commit ef0486b into NixOS:master Nov 16, 2017
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4 participants