ecopcr: init at 0.8.0

NixOS · Feb 6, 2017 · 78c052e · 78c052e
1 parent 0d422c5
commit 78c052e
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diff --git a/lib/maintainers.nix b/lib/maintainers.nix
@@ -297,6 +297,7 @@
   mdaiter = "Matthew S. Daiter <mdaiter8121@gmail.com>";
   meditans = "Carlo Nucera <meditans@gmail.com>";
   meisternu = "Matt Miemiec <meister@krutt.org>";
+  metabar = "Celine Mercier <softs@metabarcoding.org>";
   mguentner = "Maximilian Güntner <code@klandest.in>";
   mic92 = "Jörg Thalheim <joerg@higgsboson.tk>";
   michaelpj = "Michael Peyton Jones <michaelpj@gmail.com>";

diff --git a/pkgs/applications/science/biology/ecopcr/default.nix b/pkgs/applications/science/biology/ecopcr/default.nix
@@ -0,0 +1,37 @@
+{ stdenv, fetchurl, gcc, zlib, python27 }:
+
+stdenv.mkDerivation rec {
+  name = "ecopcr-0.8.0";
+
+  src = fetchurl {
+    url = "https://git.metabarcoding.org/obitools/ecopcr/uploads/6f37991b325c8c171df7e79e6ae8d080/${name}.tar.gz";
+    sha256 = "10c58hj25z78jh0g3zcbx4890yd2qrvaaanyx8mn9p49mmyf5pk6";
+  };
+
+  sourceRoot = "ecoPCR/src";
+
+  buildInputs = [ gcc python27 zlib ];
+
+  installPhase = ''
+	mkdir -p $out/bin
+	cp -v ecoPCR $out/bin
+	cp -v ecogrep $out/bin
+	cp -v ecofind $out/bin
+	cp -v ../tools/ecoPCRFormat.py $out/bin/ecoPCRFormat
+	chmod a+x $out/bin/ecoPCRFormat
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Electronic PCR software tool";
+    longDescription = ''
+      ecoPCR is an electronic PCR software developed by the LECA. It
+      helps you estimate Barcode primers quality. In conjunction with
+      OBITools, you can postprocess ecoPCR output to compute barcode
+      coverage and barcode specificity. New barcode primers can be
+      developed using the ecoPrimers software.
+    '';
+    homepage = https://git.metabarcoding.org/obitools/ecopcr/wikis/home;
+    license = licenses.cecill20;
+    maintainers = [ maintainers.metabar ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
@@ -16835,6 +16835,8 @@ with pkgs;
 
   bcftools = callPackage ../applications/science/biology/bcftools { };
 
+  ecopcr = callPackage ../applications/science/biology/ecopcr { };
+
   emboss = callPackage ../applications/science/biology/emboss { };
 
   htslib = callPackage ../development/libraries/science/biology/htslib { };