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bcftools: 1.6 -> 1.7 #35555

Merged
merged 1 commit into from Feb 26, 2018
Merged

bcftools: 1.6 -> 1.7 #35555

merged 1 commit into from Feb 26, 2018

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ryantm
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@ryantm ryantm commented Feb 25, 2018

Semi-automatic update. These checks were performed:

  • built on NixOS
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h got 0 exit code
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help got 0 exit code
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help got 0 exit code
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -v and found version 1.7
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --version and found version 1.7
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools version and found version 1.7
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h and found version 1.7
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help and found version 1.7
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help and found version 1.7
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats -h got 0 exit code
  • ran /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats --help got 0 exit code
  • found 1.7 with grep in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7

@ryantm
bcftools: 1.6 -> 1.7
9af7602 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -v` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats --help` got 0 exit code
- found 1.7 with grep in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7
@Mic92
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Mic92 commented Feb 25, 2018

@GrahamcOfBorg build bcftools

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Success on x86_64-darwin (full log)

Partial log (click to expand)

mkdir -p -m 755 /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/bin /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/share/man/man1 /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/libexec/bcftools
install -p bcftools /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/bin
install -p misc/color-chrs.pl misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/run-roh.pl misc/vcfutils.pl /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/bin
install -p -m 644 doc/bcftools.1 /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/share/man/man1
install -p plugins/*.so /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/libexec/bcftools
post-installation fixup
gzipping man pages under /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/share/man/
strip is /nix/store/4sdh09gmvl15cy0zb6i7mbvxh5syz206-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/libexec  /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7/bin
patching script interpreter paths in /nix/store/z34s24alf4asm65yps64788fi5hjl9xg-bcftools-1.7

@GrahamcOfBorg
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Success on aarch64-linux (full log)

Partial log (click to expand)

shrinking /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7/libexec/bcftools/ad-bias.so
shrinking /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7/libexec/bcftools/GTsubset.so
shrinking /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7/libexec/bcftools/GTisec.so
shrinking /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7/bin/bcftools
gzipping man pages under /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7/share/man/
strip is /nix/store/lvx1acn1ig1j2km8jds5x3ggh3f2wa8v-binutils-2.28.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7/libexec  /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7/bin
patching script interpreter paths in /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7
checking for references to /build in /nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7...
/nix/store/vpia6jqh54cm41lk2lw4rnmn758jpz1b-bcftools-1.7

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Partial log (click to expand)

shrinking /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/libexec/bcftools/tag2tag.so
shrinking /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/libexec/bcftools/split.so
shrinking /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/libexec/bcftools/impute-info.so
shrinking /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/libexec/bcftools/mendelian.so
shrinking /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools
gzipping man pages under /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/share/man/
strip is /nix/store/b0zlxla7dmy1iwc3g459rjznx59797xy-binutils-2.28.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/libexec  /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin 
patching script interpreter paths in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7
checking for references to /tmp/nix-build-bcftools-1.7.drv-0 in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7...

@adisbladis adisbladis merged commit e046d8b into NixOS:master Feb 26, 2018
@ryantm ryantm deleted the auto-update/bcftools-1.6-to-1.7 branch March 14, 2018 19:16
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@ryantm @Mic92 @GrahamcOfBorg @adisbladis