Merge commit '30d031b5d8d05422586043c3f105f4d9110e4f59' into HEAD

NixOS · Feb 8, 2018 · 50a9d51 · 50a9d51 · FRidh · Feb 8, 2018
2 parents 2e6032f + 30d031b
commit 50a9d51
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Showing 100 changed files with 674 additions and 507 deletions.
diff --git a/pkgs/applications/science/spyder/default.nix b/pkgs/applications/science/spyder/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchPypi, unzip, buildPythonApplication, makeDesktopItem
 # mandatory
-, qtpy, numpydoc, qtconsole, qtawesome, jedi, pycodestyle, psutil
-, pyflakes, rope, sphinx, nbconvert, mccabe
+, numpydoc, qtconsole, qtawesome, jedi, pycodestyle, psutil
+, pyflakes, rope, sphinx, nbconvert, mccabe, pyopengl, cloudpickle
 # optional
 , numpy ? null, scipy ? null, matplotlib ? null
 # optional
@@ -10,17 +10,21 @@
 
 buildPythonApplication rec {
   pname = "spyder";
-  version = "3.2.4";
-  namePrefix = "";
+  version = "3.2.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "028hg71gfq2yrplwhhl7hl4rbwji1l0zxzghblwmb0i443ki10v3";
+    sha256 = "87d6a4f5ee1aac4284461ee3584c3ade50cb53feb3fe35abebfdfb9be18c526a";
   };
 
+  # Somehow setuptools can't find pyqt5. Maybe because the dist-info folder is missing?
+  postPatch = ''
+    substituteInPlace setup.py --replace 'pyqt5;python_version>="3"' ' '
+  '';
+
   propagatedBuildInputs = [
-    jedi pycodestyle psutil qtpy pyflakes rope numpy scipy matplotlib pylint
-    numpydoc qtconsole qtawesome nbconvert mccabe
+    jedi pycodestyle psutil pyflakes rope numpy scipy matplotlib pylint
+    numpydoc qtconsole qtawesome nbconvert mccabe pyopengl cloudpickle
   ];
 
   # There is no test for spyder

diff --git a/pkgs/development/compilers/llvm/5/llvm.nix b/pkgs/development/compilers/llvm/5/llvm.nix
@@ -36,7 +36,7 @@ in stdenv.mkDerivation (rec {
     mv compiler-rt-* $sourceRoot/projects/compiler-rt
   '';
 
-  outputs = [ "out" ]
+  outputs = [ "out" "python" ]
     ++ stdenv.lib.optional enableSharedLibraries "lib";
 
   nativeBuildInputs = [ cmake python ]
@@ -120,7 +120,11 @@ in stdenv.mkDerivation (rec {
     export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$PWD/lib
   '';
 
-  postInstall = stdenv.lib.optionalString enableSharedLibraries ''
+  postInstall = ''
+    mkdir -p $python/share
+    mv $out/share/opt-viewer $python/share/opt-viewer
+  ''
+  + stdenv.lib.optionalString enableSharedLibraries ''
     moveToOutput "lib/libLLVM-*" "$lib"
     moveToOutput "lib/libLLVM${stdenv.hostPlatform.extensions.sharedLibrary}" "$lib"
     substituteInPlace "$out/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" \

diff --git a/pkgs/development/libraries/boehm-gc/default.nix b/pkgs/development/libraries/boehm-gc/default.nix
@@ -4,14 +4,14 @@
 
 stdenv.mkDerivation rec {
   name = "boehm-gc-${version}";
-  version = "7.6.2";
+  version = "7.6.4";
 
   src = fetchurl {
     urls = [
       "http://www.hboehm.info/gc/gc_source/gc-${version}.tar.gz"
       "https://github.com/ivmai/bdwgc/releases/download/v${version}/gc-${version}.tar.gz"
     ];
-    sha256 = "07nli9hgdzc09qzw169sn7gchkrn5kqgyniv2rspcy1xaq2j04dx";
+    sha256 = "076dzsqqyxd3nlzs0z277vvhqjp8nv5dqi763s0m90zr6ljiyk5r";
   };
 
   buildInputs = [ libatomic_ops ];

diff --git a/pkgs/development/libraries/boost/generic.nix b/pkgs/development/libraries/boost/generic.nix
@@ -144,7 +144,7 @@ stdenv.mkDerivation {
 
   postFixup = ''
     # Make boost header paths relative so that they are not runtime dependencies
-    find "$dev/include" \( -name '*.hpp' -or -name '*.h' -or -name '*.ipp' \) \
+    cd "$dev" && find include \( -name '*.hpp' -or -name '*.h' -or -name '*.ipp' \) \
       -exec sed '1i#line 1 "{}"' -i '{}' \;
   '' + optionalString (hostPlatform.libc == "msvcrt") ''
     $RANLIB "$out/lib/"*.a

diff --git a/pkgs/development/libraries/librsvg/default.nix b/pkgs/development/libraries/librsvg/default.nix
@@ -1,16 +1,22 @@
 { lib, stdenv, fetchurl, pkgconfig, glib, gdk_pixbuf, pango, cairo, libxml2, libgsf
-, bzip2, libcroco, libintlOrEmpty, darwin
+, bzip2, libcroco, libintlOrEmpty, darwin, rust
 , withGTK ? false, gtk3 ? null
 , gobjectIntrospection ? null, enableIntrospection ? false }:
 
 # no introspection by default, it's too big
 
+let
+  version = "2.42.2";
+  releaseVersion = (lib.concatStringsSep "." (lib.lists.take 2
+    (lib.splitString "." version)));
+
+in
 stdenv.mkDerivation rec {
-  name = "librsvg-2.40.19";
+  name = "librsvg-${version}";
 
   src = fetchurl {
-    url    = "mirror://gnome/sources/librsvg/2.40/librsvg-2.40.18.tar.xz";
-    sha256 = "0k2nbd4g31qinkdfd8r5c5ih2ixl85fbkgkqqh9747lwr24c9j5z";
+    url    = "mirror://gnome/sources/librsvg/${releaseVersion}/${name}.tar.xz";
+    sha256 = "0c550a0bffef768a436286116c03d9f6cd3f97f5021c13e7f093b550fac12562";
   };
 
   NIX_LDFLAGS = if stdenv.isDarwin then "-lintl" else null;
@@ -22,7 +28,7 @@ stdenv.mkDerivation rec {
 
   propagatedBuildInputs = [ glib gdk_pixbuf cairo ] ++ lib.optional withGTK gtk3;
 
-  nativeBuildInputs = [ pkgconfig ]
+  nativeBuildInputs = [ pkgconfig rust.rustc rust.cargo ]
     ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [
       ApplicationServices
     ]);

diff --git a/pkgs/development/libraries/libuv/default.nix b/pkgs/development/libraries/libuv/default.nix
@@ -2,14 +2,14 @@
 , ApplicationServices, CoreServices }:
 
 stdenv.mkDerivation rec {
-  version = "1.18.0";
+  version = "1.19.1";
   name = "libuv-${version}";
 
   src = fetchFromGitHub {
     owner = "libuv";
     repo = "libuv";
     rev = "v${version}";
-    sha256 = "0s71c2y4ll3vp463hsdk74q4hr7wprkxc2a4agw3za2hhzcb95pd";
+    sha256 = "020jap4xvjns1rgb2kvpf1nib3f2d5fyqh04afgkk32hiag0kn66";
   };
 
   postPatch = let

diff --git a/pkgs/development/libraries/wildmidi/default.nix b/pkgs/development/libraries/wildmidi/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, cmake, alsaLib, freepats }:
 
 stdenv.mkDerivation rec {
-  name = "wildmidi-0.3.9";
+  name = "wildmidi-0.4.2";
 
   src = fetchurl {
     url = "https://github.com/Mindwerks/wildmidi/archive/${name}.tar.gz";
-    sha256 = "1fbcsvzn8akvvy7vg6vmnikcc8gh405b4gp1r016bq7yginljwwp";
+    sha256 = "178hm2wh5h7apkcb1a0dyla2ia8569php8ikz62rh0g6dp5l67am";
   };
 
   nativeBuildInputs = [ cmake ];

diff --git a/pkgs/development/python-modules/adal/default.nix b/pkgs/development/python-modules/adal/default.nix
@@ -3,12 +3,12 @@
 
 buildPythonPackage rec {
   pname = "adal";
-  version = "0.4.7";
+  version = "0.5.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "114046ac85d0054791c21b00922f26286822bc6f2ba3716db42e7e57f762ef20";
+    sha256 = "120821f72ca9d59a7c7197fc14d0e27448ff8d331fae230f92d713b9b5c721f7";
   };
 
   propagatedBuildInputs =  [ requests pyjwt dateutil ];

diff --git a/pkgs/development/python-modules/agate-excel/default.nix b/pkgs/development/python-modules/agate-excel/default.nix
@@ -3,11 +3,11 @@
 buildPythonPackage rec {
     name = "${pname}-${version}";
     pname = "agate-excel";
-    version = "0.2.1";
+    version = "0.2.2";
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "1d28s01a0a8n8rdrd78w88cqgl3lawzy38h9afwm0iks618i0qn7";
+      sha256 = "8923f71ee2b5b7b21e52fb314a769b28fb902f647534f5cbbb41991d8710f4c7";
     };
 
     propagatedBuildInputs = [ agate openpyxl xlrd ];

diff --git a/pkgs/development/python-modules/agate-sql/default.nix b/pkgs/development/python-modules/agate-sql/default.nix
@@ -3,11 +3,11 @@
 buildPythonPackage rec {
     name = "${pname}-${version}";
     pname = "agate-sql";
-    version = "0.5.2";
+    version = "0.5.3";
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "0qlfwql6fnbs0r1rj7nxv4n5scad53b8dlh4qv6gyklvdk3wwn14";
+      sha256 = "877b7b85adb5f0325455bba8d50a1623fa32af33680b554feca7c756a15ad9b4";
     };
 
     propagatedBuildInputs = [ agate sqlalchemy ];

diff --git a/pkgs/development/python-modules/ansicolor/default.nix b/pkgs/development/python-modules/ansicolor/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "ansicolor";
-  version = "0.2.4";
+  version = "0.2.6";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0zlkk9706xn5yshwzdn8xsfkim8iv44zsl6qjwg2f4gn62rqky1h";
+    sha256 = "d17e1b07b9dd7ded31699fbca53ae6cd373584f9b6dcbc124d1f321ebad31f1d";
   };
 
   meta = with stdenv.lib; {

diff --git a/pkgs/development/python-modules/asgiref/default.nix b/pkgs/development/python-modules/asgiref/default.nix
@@ -1,12 +1,12 @@
 { stdenv, buildPythonPackage, fetchurl, six }:
 buildPythonPackage rec {
-  version = "2.1.0";
+  version = "2.1.1";
   pname = "asgiref";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "mirror://pypi/a/asgiref/${name}.tar.gz";
-    sha256 = "2bfd70fcc51df4036768b91d7b13524090dc8f366d79fa44ba2b0aeb47306344";
+    sha256 = "112828022d772925b47b22caf8108dadd3b26bb0af719eb01b2c3a807795429d";
   };
 
   propagatedBuildInputs = [ six ];

diff --git a/pkgs/development/python-modules/astroid/default.nix b/pkgs/development/python-modules/astroid/default.nix
@@ -6,11 +6,11 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "astroid";
-  version = "1.6.0";
+  version = "1.6.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "71dadba2110008e2c03f9fde662ddd2053db3c0489d0e03c94e828a0399edd4f";
+    sha256 = "f0a0e386dbca9f93ea9f3ea6f32b37a24720502b7baa9cb17c3976a680d43a06";
   };
 
   propagatedBuildInputs = [ logilab_common six lazy-object-proxy wrapt ]

diff --git a/pkgs/development/python-modules/autopep8/default.nix b/pkgs/development/python-modules/autopep8/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "autopep8";
-  version = "1.3.3";
+  version = "1.3.4";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0c1gl648g2xnz3j0rsp71ld4i32zlglmqjvqf4q8r08jp3zpny7z";
+    sha256 = "c7be71ab0cb2f50c9c22c82f0c9acaafc6f57492c3fbfee9790c415005c2b9a5";
   };
 
   propagatedBuildInputs = [ pycodestyle ];

diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix
@@ -12,11 +12,11 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "botocore";
-  version = "1.8.33";
+  version = "1.8.36";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fa29ea54f26b1193682332d3b4cdde7aa79b4eaccb23f70e88672509c24546f4";
+    sha256 = "b2c9e0fd6d14910f759a33c19f8315dddedbb3c5569472b7be7ceed4f001a675";
   };
 
   propagatedBuildInputs = [

diff --git a/pkgs/development/python-modules/buildout-nix/default.nix b/pkgs/development/python-modules/buildout-nix/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "zc.buildout";
-  version = "2.10.0";
+  version = "2.11.0";
   name = "${pname}-nix-${version}";
 
   src = fetchurl {
     url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${pname}-${version}.tar.gz";
-    sha256 = "00wi0f6wpfl2gywr02x2yqvx6i1k0ll5w4lhdl0khijk4g7mk8dq";
+    sha256 = "092b0a147d5fb4e79ee0afde665570f85738e714463854f9e4f7f38d0b27ea82";
   };
 
   patches = [ ./nix.patch ];

diff --git a/pkgs/development/python-modules/chainer/default.nix b/pkgs/development/python-modules/chainer/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "chainer";
-  version = "3.2.0";
+  version = "3.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0mbc8kwk7pvg03bf0j57a48gr6rsdg4lzmyj0dak8y2l4lmyskpw";
+    sha256 = "0669375e5b09d687781a37d6c025ee0a6015f575b4d2c70a2ad09c33b8228f86";
   };
 
   checkInputs = [

diff --git a/pkgs/development/python-modules/channels/default.nix b/pkgs/development/python-modules/channels/default.nix
@@ -4,11 +4,11 @@
 buildPythonPackage rec {
   pname = "channels";
   name = "${pname}-${version}";
-  version = "1.1.8";
+  version = "2.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0gsy3hwn1vd709jkw8ay44qrm6aw7qggr312z8xwzq0x4ihjda02";
+    sha256 = "c365492b90bd936c763e06cd76bda96cd3e70e5a5d2a196c25754e0c1d8da85a";
   };
 
   # Files are missing in the distribution

diff --git a/pkgs/development/python-modules/click-threading/default.nix b/pkgs/development/python-modules/click-threading/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "click-threading";
-  version = "0.4.2";
+  version = "0.4.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "400b0bb63d9096b6bf2806efaf742a1cc8b6c88e0484f0afe7d7a7f0e9870609";
+    sha256 = "b2b0fada5bf184b56afaccc99d0d2548d8ab07feb2e95e29e490f6b99c605de7";
   };
 
   checkInputs = [ pytest ];

diff --git a/pkgs/development/python-modules/cryptography/default.nix b/pkgs/development/python-modules/cryptography/default.nix
@@ -0,0 +1,67 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, openssl
+, cryptography_vectors
+, darwin
+, idna
+, asn1crypto
+, packaging
+, six
+, pythonOlder
+, enum34
+, ipaddress
+, isPyPy
+, cffi
+, pytest
+, pretend
+, iso8601
+, pytz
+, hypothesis
+}:
+
+let
+  version = "2.1.4";
+in assert version == cryptography_vectors.version; buildPythonPackage rec {
+  # also bump cryptography_vectors
+  pname = "cryptography";
+  inherit version;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "e4d967371c5b6b2e67855066471d844c5d52d210c36c28d49a8507b96e2c5291";
+  };
+
+  outputs = [ "out" "dev" ];
+
+  buildInputs = [ openssl cryptography_vectors ]
+             ++ stdenv.lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Security;
+  propagatedBuildInputs = [
+    idna
+    asn1crypto
+    packaging
+    six
+  ] ++ stdenv.lib.optional (pythonOlder "3.4") enum34
+  ++ stdenv.lib.optional (pythonOlder "3.3") ipaddress
+  ++ stdenv.lib.optional (!isPyPy) cffi;
+
+  checkInputs = [
+    pytest
+    pretend
+    iso8601
+    pytz
+    hypothesis
+  ];
+
+  # The test assumes that if we're on Sierra or higher, that we use `getentropy`, but for binary
+  # compatibility with pre-Sierra for binary caches, we hide that symbol so the library doesn't
+  # use it. This boils down to them checking compatibility with `getentropy` in two different places,
+  # so let's neuter the second test.
+  postPatch = ''
+    substituteInPlace ./tests/hazmat/backends/test_openssl.py --replace '"16.0"' '"99.0"'
+  '';
+
+  # IOKit's dependencies are inconsistent between OSX versions, so this is the best we
+  # can do until nix 1.11's release
+  __impureHostDeps = [ "/usr/lib" ];
+}