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igv: 2.4.6 -> 2.4.8 #35720

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merged 1 commit into from Feb 27, 2018
Merged

igv: 2.4.6 -> 2.4.8 #35720

merged 1 commit into from Feb 27, 2018

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ryantm
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@ryantm ryantm commented Feb 27, 2018

Semi-automatic update. These checks were performed:

  • built on NixOS
  • found 2.4.8 with grep in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8
  • found 2.4.8 in filename of file in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8

cc "@mimadrid"

@ryantm
igv: 2.4.6 -> 2.4.8
d1dc4ca 
Semi-automatic update. These checks were performed:

- built on NixOS
- found 2.4.8 with grep in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8
- found 2.4.8 in filename of file in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8

cc "@mimadrid"
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ryantm commented Feb 27, 2018

@GrahamcOfBorg build igv

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Failure on aarch64-linux (full log)

Partial log (click to expand)

Package ‘oraclejre-8u161’ in /var/lib/gc-of-borg/nix-test-rs-2/repo/38dca4e3aa6bca43ea96d2fcc04e8229/builder/grahamc-aarch64-community-2/pkgs/development/compilers/oraclejdk/jdk-linux-base.nix:71 has an unfree license (‘unfree’), refusing to evaluate.

a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.

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Success on x86_64-darwin (full log)

Partial log (click to expand)

'igv.command' -> '/nix/store/gri7d71wa30j70by6ss4011kgmid19f8-igv-2.4.8/share/igv.command'
'igv.jar' -> '/nix/store/gri7d71wa30j70by6ss4011kgmid19f8-igv-2.4.8/share/igv.jar'
'igv.sh' -> '/nix/store/gri7d71wa30j70by6ss4011kgmid19f8-igv-2.4.8/share/igv.sh'
post-installation fixup
strip is /nix/store/4sdh09gmvl15cy0zb6i7mbvxh5syz206-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/gri7d71wa30j70by6ss4011kgmid19f8-igv-2.4.8/bin
patching script interpreter paths in /nix/store/gri7d71wa30j70by6ss4011kgmid19f8-igv-2.4.8
/nix/store/gri7d71wa30j70by6ss4011kgmid19f8-igv-2.4.8/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/pkjmwq7sqrvjg7cjiph6hq0khsmfl6p8-bash-4.4-p12/bin/sh"
/nix/store/gri7d71wa30j70by6ss4011kgmid19f8-igv-2.4.8/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/pkjmwq7sqrvjg7cjiph6hq0khsmfl6p8-bash-4.4-p12/bin/sh"
/nix/store/gri7d71wa30j70by6ss4011kgmid19f8-igv-2.4.8

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Success on x86_64-linux (full log)

Partial log (click to expand)

'igv.sh' -> '/nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8/share/igv.sh'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8
strip is /nix/store/b0zlxla7dmy1iwc3g459rjznx59797xy-binutils-2.28.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8/bin 
patching script interpreter paths in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8
/nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/zqh3l3lyw32q1ayb15bnvg9f24j5v2p0-bash-4.4-p12/bin/sh"
/nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/zqh3l3lyw32q1ayb15bnvg9f24j5v2p0-bash-4.4-p12/bin/sh"
checking for references to /tmp/nix-build-igv-2.4.8.drv-0 in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8...
/nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8

@FRidh FRidh merged commit 671e405 into NixOS:master Feb 27, 2018
@ryantm ryantm deleted the auto-update/igv-2.4.6-to-2.4.8 branch February 27, 2018 15:03
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@ryantm @GrahamcOfBorg @FRidh