Skip to content

Update/htslib 1.4 #25594

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 3 commits into from
May 11, 2017
Merged

Update/htslib 1.4 #25594

merged 3 commits into from
May 11, 2017

Conversation

mimame
Copy link
Member

@mimame mimame commented May 7, 2017

Motivation for this change

Update htslib, samtools and bcftools to the last versions

Things done
  • Tested using sandboxing
    (nix.useSandbox on NixOS,
    or option build-use-sandbox in nix.conf
    on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • Linux
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Fits CONTRIBUTING.md.

Sorry, something went wrong.

mimadrid added 2 commits May 7, 2017 23:15

Unverified

No user is associated with the committer email.

Unverified

No user is associated with the committer email.
@mimame mimame closed this May 7, 2017
@mimame mimame deleted the update/htslib-1.4 branch May 7, 2017 21:21
@mimame mimame restored the update/htslib-1.4 branch May 7, 2017 21:21
@mimame mimame reopened this May 7, 2017
@pSub pSub added 8.has: package (update) This PR updates a package to a newer version and removed 8.has: package (update) This PR updates a package to a newer version labels May 8, 2017

Verified

This commit was signed with the committer’s verified signature.
Mic92 Jörg Thalheim
@Mic92 Mic92 force-pushed the update/htslib-1.4 branch from fb9c194 to 8d1bebf Compare May 11, 2017 06:05
};

buildInputs = [ zlib ];
buildInputs = [ zlib bzip2 lzma perl ];
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I added perl here, since there was a perl script in bin/.

@Mic92 Mic92 merged commit be19ad1 into NixOS:master May 11, 2017
@Mic92
Copy link
Member

Mic92 commented May 11, 2017

Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

3 participants