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Patch/cxsmilesgen #221

Merged
merged 14 commits into from Aug 17, 2016
Merged

Patch/cxsmilesgen #221

merged 14 commits into from Aug 17, 2016

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johnmay
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@johnmay johnmay commented Aug 10, 2016

Work in progress but made SMILES generation options more tunable.

  • Still to do CXSMILES for reaction, inc fragment grouping.
  • Documentation
  • improved canon
// SMILES generator that will only write tetrahedral stereo but not isotopes, or cis-trans etc.
SmilesGenerator smigen = new SmilesGenerator(SmiOpt.StereoTetrahedral | SmiOpt.Canonical);

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johnmay commented Aug 13, 2016

Okay reactions are done, actually turned out existing reactions weren't canonical. Just need to update documentation now which I'll try and get done tonight.

@egonw
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egonw commented Aug 16, 2016

Looks ok to me, but I did not check all the bit operation stuff, which I am not using daily.

John, also, I cannot merge it, because there are conflicts that need manual resolving. Can you plz rebase the branch on the latest master?

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johnmay commented Aug 16, 2016

Resolved

@egonw egonw merged commit cf622a4 into master Aug 17, 2016
@johnmay
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johnmay commented Aug 17, 2016

Thanks will get Nina's/Nickolays patch rebased tonight and reviewed properly.

@johnmay johnmay deleted the patch/cxsmilesgen branch August 18, 2016 14:58
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2 participants