Merge pull request #29009 from FRidh/python-fixes-2

Python: several fixes (2) (cherry picked from commit aabadda)
NixOS · Sep 7, 2017 · c51b089 · c51b089
1 parent 165fa89
commit c51b089
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Showing 52 changed files with 1,159 additions and 204 deletions.
diff --git a/lib/maintainers.nix b/lib/maintainers.nix
@@ -576,6 +576,7 @@
   tavyc = "Octavian Cerna <octavian.cerna@gmail.com>";
   ltavard = "Laure Tavard <laure.tavard@univ-grenoble-alpes.fr>";
   teh = "Tom Hunger <tehunger@gmail.com>";
+  teto = "Matthieu Coudron <mcoudron@hotmail.com>";
   telotortium = "Robert Irelan <rirelan@gmail.com>";
   thall = "Niclas Thall <niclas.thall@gmail.com>";
   thammers = "Tobias Hammerschmidt <jawr@gmx.de>";

diff --git a/pkgs/applications/misc/toot/default.nix b/pkgs/applications/misc/toot/default.nix
@@ -1,19 +1,25 @@
 { stdenv, fetchFromGitHub, pythonPackages }:
 
 pythonPackages.buildPythonApplication rec {
-  version = "0.8.0";
+  version = "0.13.0";
   name    = "toot-${version}";
 
   src = fetchFromGitHub {
     owner  = "ihabunek";
     repo   = "toot";
     rev    = "${version}";
-    sha256 = "1y1jz4f53njq94zab0icf7jhd4jp10ywm508l4lw6spb69wr7rdy";
+    sha256 = "0gbsq43qv5qg4avx7czs57k40m8lzh8f1z5yizqqc7r02p2sacnc";
   };
 
+  checkInputs = with pythonPackages; [ pytest ];
+
   propagatedBuildInputs = with pythonPackages;
     [ requests beautifulsoup4 future ];
 
+  checkPhase = ''
+    py.test
+  '';
+
   meta = with stdenv.lib; {
     description = "Mastodon CLI interface";
     homepage    = "https://github.com/ihabunek/toot";

diff --git a/pkgs/development/libraries/protobuf/3.3.nix b/pkgs/development/libraries/protobuf/3.3.nix
@@ -0,0 +1,6 @@
+{ callPackage, lib, ... }:
+
+lib.overrideDerivation (callPackage ./generic-v3.nix {
+  version = "3.3.0";
+  sha256 = "1258yz9flyyaswh3izv227kwnhwcxn4nwavdz9iznqmh24qmi59w";
+}) (attrs: { NIX_CFLAGS_COMPILE = "-Wno-error"; })
diff --git a/pkgs/development/libraries/science/math/cudnn/8.0-6.0/default.nix b/pkgs/development/libraries/science/math/cudnn/8.0-6.0/default.nix
@@ -0,0 +1,40 @@
+{ stdenv
+, requireFile
+, cudatoolkit
+, fetchurl
+}:
+
+stdenv.mkDerivation rec {
+  version = "6.0";
+  cudatoolkit_version = "8.0";
+
+  name = "cudatoolkit-${cudatoolkit_version}-cudnn-${version}";
+
+  src = fetchurl {
+    url = "http://developer.download.nvidia.com/compute/redist/cudnn/v6.0/cudnn-8.0-linux-x64-v6.0.tgz";
+    sha256 = "173zpgrk55ri8if7s5yngsc89ajd6hz4pss4cdxlv6lcyh5122cv";
+  };
+
+  installPhase = ''
+    function fixRunPath {
+      p=$(patchelf --print-rpath $1)
+      patchelf --set-rpath "$p:${stdenv.lib.makeLibraryPath [ stdenv.cc.cc ]}" $1
+    }
+    fixRunPath lib64/libcudnn.so
+
+    mkdir -p $out
+    cp -a include $out/include
+    cp -a lib64 $out/lib64
+  '';
+
+  propagatedBuildInputs = [
+    cudatoolkit
+  ];
+
+  meta = with stdenv.lib; {
+    description = "NVIDIA CUDA Deep Neural Network library (cuDNN)";
+    homepage = https://developer.nvidia.com/cudnn;
+    license = stdenv.lib.licenses.unfree;
+    maintainers = with maintainers; [ jpbernardy ];
+  };
+}
diff --git a/pkgs/development/python-modules/aioamqp/default.nix b/pkgs/development/python-modules/aioamqp/default.nix
@@ -0,0 +1,24 @@
+{ lib, buildPythonPackage, fetchPypi, isPy33, pythonOlder,
+  asyncio
+}:
+
+buildPythonPackage rec {
+  pname = "aioamqp";
+  name = "${pname}-${version}";
+  version = "0.10.0";
+
+  meta = {
+    homepage = https://github.com/polyconseil/aioamqp;
+    description = "AMQP implementation using asyncio";
+    license = lib.licenses.bsd3;
+  };
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0132921yy31ijb8w439zcz1gla4hiws4hx8zf6la4hjr01nsy666";
+  };
+
+  buildInputs = lib.optionals isPy33 [ asyncio ];
+
+  disabled = pythonOlder "3.3";
+}
diff --git a/pkgs/development/python-modules/asana/default.nix b/pkgs/development/python-modules/asana/default.nix
@@ -0,0 +1,37 @@
+{ lib, buildPythonPackage, fetchPypi,
+  pytest, requests, requests_oauthlib, six
+}:
+
+buildPythonPackage rec {
+  pname = "asana";
+  version = "0.6.2";
+  name = "${pname}-${version}";
+
+  meta = {
+    description = "Python client library for Asana";
+    homepage = https://github.com/asana/python-asana;
+    license = lib.licenses.mit;
+  };
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0skai72392n3i1c4bl3hn2kh5lj990qsbasdwkbjdcy6vq57jggf";
+  };
+
+  buildInputs = [ pytest ];
+  propagatedBuildInputs = [ requests requests_oauthlib six ];
+
+  patchPhase = ''
+    echo > requirements.txt
+    sed -i "s/requests~=2.9.1/requests >=2.9.1/" setup.py
+    sed -i "s/requests_oauthlib~=0.6.1/requests_oauthlib >=0.6.1/" setup.py
+  '';
+
+  # ERROR: file not found: tests
+  doCheck = false; 
+
+  checkPhase = ''
+    py.test tests
+  '';
+
+}
diff --git a/pkgs/development/python-modules/astropy/default.nix b/pkgs/development/python-modules/astropy/default.nix
@@ -2,9 +2,7 @@
 , fetchPypi
 , buildPythonPackage
 , numpy
-, cython
-, h5py
-, scipy }:
+, pytest }:
 
 buildPythonPackage rec {
 
@@ -17,7 +15,8 @@ buildPythonPackage rec {
     inherit pname version;
     sha256 = "25e0881a392a2e03b4a705cf9592f01894d23f64797323b21387efa8ea9ec03e";
   };
-  propagatedBuildInputs = [ numpy cython h5py scipy ];
+
+  propagatedBuildInputs = [ pytest numpy ]; # yes it really has pytest in install_requires
 
 
   meta = {

diff --git a/pkgs/development/python-modules/backports_weakref/default.nix b/pkgs/development/python-modules/backports_weakref/default.nix
@@ -0,0 +1,33 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, setuptools_scm
+# , backports
+, python
+}:
+
+buildPythonPackage rec {
+  name = "${pname}-${version}";
+  pname = "backports.weakref";
+  version = "1.0rc1";
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "14i8m3lspykdfpzf50grij3z286j9q8f32f2bnwdicv659qvy4w8";
+  };
+
+  buildInputs = [ setuptools_scm ];
+#   checkInputs = [ backports ];
+
+  # Requires backports package
+  doCheck = false;
+
+  checkPhase = ''
+    ${python.interpreter} -m unittest discover tests
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Backports of new features in Python’s weakref module";
+    license = licenses.psfl;
+    maintainers = with maintainers; [ jpbernardy ];
+  };
+}
diff --git a/pkgs/development/python-modules/behave/default.nix b/pkgs/development/python-modules/behave/default.nix
@@ -0,0 +1,45 @@
+{ stdenv, fetchPypi
+, buildPythonApplication, python, pythonAtLeast
+, mock, nose, pyhamcrest
+, glibcLocales, parse, parse-type, six
+}:
+buildPythonApplication rec {
+  pname = "behave";
+  version = "1.2.5";
+  name = "${pname}-${version}";
+
+  disabled = pythonAtLeast "3.6";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "81b731ac5187e31e4aad2594944fa914943683a9818320846d037c5ebd6d5d0b";
+  };
+
+  checkInputs = [ mock nose pyhamcrest ];
+  buildInputs = [ glibcLocales ];
+  propagatedBuildInputs = [ parse parse-type six ];
+
+  postPatch = ''
+    patchShebangs bin
+  '';
+
+  doCheck = true;
+
+  checkPhase = ''
+    export LANG="en_US.UTF-8"
+    export LC_ALL="en_US.UTF-8"
+
+    nosetests -x
+
+    ${python.interpreter} bin/behave -f progress3 --stop --tags='~@xfail' features/
+    ${python.interpreter} bin/behave -f progress3 --stop --tags='~@xfail' tools/test-features/
+    ${python.interpreter} bin/behave -f progress3 --stop --tags='~@xfail' issue.features/
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/behave/behave;
+    description = "behaviour-driven development, Python style";
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ alunduil ];
+  };
+}
diff --git a/pkgs/development/python-modules/coveralls/default.nix b/pkgs/development/python-modules/coveralls/default.nix
@@ -2,12 +2,15 @@
 , lib
 , fetchPypi
 , mock
-, pytest_27
+, pytest
+, pytestrunner
 , sh
 , coverage
 , docopt
 , requests
+, urllib3
 , git
+, isPy3k
 }:
 
 buildPythonPackage rec {
@@ -21,13 +24,17 @@ buildPythonPackage rec {
     sha256 = "510682001517bcca1def9f6252df6ce730fcb9831c62d9fff7c7d55b6fdabdf3";
   };
 
-  buildInputs = [
+  checkInputs = [
     mock
     sh
-    pytest_27
+    pytest
     git
   ];
 
+  buildInputs = [
+    pytestrunner
+  ];
+
   # FIXME: tests requires .git directory to be present
   doCheck = false;
 
@@ -39,7 +46,7 @@ buildPythonPackage rec {
     coverage
     docopt
     requests
-  ];
+  ] ++ lib.optional (!isPy3k) urllib3;
 
   meta = {
     description = "Show coverage stats online via coveralls.io";

diff --git a/pkgs/development/python-modules/diff-match-patch/default.nix b/pkgs/development/python-modules/diff-match-patch/default.nix
@@ -0,0 +1,18 @@
+{ lib, buildPythonPackage, fetchPypi }:
+
+buildPythonPackage rec {
+  pname = "diff-match-patch";
+  name = "${pname}-${version}";
+  version = "20121119";
+
+  meta = {
+    homepage = https://code.google.com/p/google-diff-match-patch/;
+    description = "Diff, Match and Patch libraries for Plain Text";
+    license = lib.licenses.asl20;
+  };
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0k1f3v8nbidcmmrk65m7h8v41jqi37653za9fcs96y7jzc8mdflx";
+  };
+}
diff --git a/pkgs/development/python-modules/django-ipware/default.nix b/pkgs/development/python-modules/django-ipware/default.nix
@@ -0,0 +1,23 @@
+{ lib, buildPythonPackage, fetchPypi, django }:
+
+buildPythonPackage rec {
+  pname = "django-ipware";
+  name = "${pname}-${version}";
+  version = "1.1.6";
+
+  meta = {
+    description = "A Django application to retrieve user's IP address";
+    homepage = https://github.com/un33k/django-ipware;
+    license = lib.licenses.mit;
+  };
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "00zah4g2h93nbsijz556j97v9qkn9sxcia1a2wrwdwnav2fhzack";
+  };
+
+  propagatedBuildInputs = [ django ];
+
+  # django.core.exceptions.ImproperlyConfigured: Requested setting IPWARE_TRUSTED_PROXY_LIST, but settings are not configured. You must either define the environment variable DJANGO_SETTINGS_MODULE or call settings.configure() before accessing settings.
+  doCheck = false;
+}
diff --git a/pkgs/development/python-modules/django-jinja2/default.nix b/pkgs/development/python-modules/django-jinja2/default.nix
@@ -0,0 +1,29 @@
+{ lib, buildPythonPackage, fetchPypi,
+  django, jinja2, pytz, tox
+ }:
+
+buildPythonPackage rec {
+  pname = "django-jinja";
+  name = "${pname}-${version}";
+  version = "2.2.2";
+
+  meta = {
+    description = "Simple and nonobstructive jinja2 integration with Django";
+    homepage = https://github.com/niwinz/django-jinja;
+    license = lib.licenses.bsd3;
+  };
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "099b99iprkvlsndrjmw4v3i3i60i9gm1aq5r88z15r7vgmv6sigj";
+  };
+
+  buildInputs = [ django pytz tox ];
+  propagatedBuildInputs = [ django jinja2 ];
+
+  # python installed: The directory '/homeless-shelter/.cache/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.,appdirs==1.4.3,Django==1.11.1,django-jinja==2.2.2,Jinja2==2.9.6,MarkupSafe==1.0,packaging==16.8,pyparsing==2.2.0,pytz==2017.2,six==1.10.0
+  doCheck = false;
+  checkPhase = ''
+    tox
+  '';
+}
diff --git a/pkgs/development/python-modules/django-pglocks/default.nix b/pkgs/development/python-modules/django-pglocks/default.nix
@@ -0,0 +1,24 @@
+{ lib, buildPythonPackage, fetchPypi, django }:
+
+buildPythonPackage rec {
+  pname = "django-pglocks";
+  name = "${pname}-${version}";
+  version = "1.0.2";
+
+  meta = {
+    description = "PostgreSQL locking context managers and functions for Django.";
+    homepage = https://github.com/Xof/django-pglocks;
+    license = lib.licenses.mit;
+  };
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1ks4k0bk4457wfl3xgzr4v7xb0lxmnkhxwhlp0bbnmzipdafw1cl";
+  };
+
+  buildInputs = [ django ];
+  propagatedBuildInputs = [ django ];
+
+  # tests need a postgres database
+  doCheck = false;
+}