python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

r-ryantm · 2018-10-24T14:52:02Z

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-fiona/versions.

meta.description for python36Packages.fiona is: '"OGR's neat, nimble, no-nonsense API for Python"'.

Checks done (click to expand)

built on NixOS
/nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin/.fio-wrapped passed the binary check.
/nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin/fio passed the binary check.
2 of 2 passed binary check by having a zero exit code.
2 of 2 passed binary check by having the new version present in output.
found 1.8a2 with grep in /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2
directory tree listing: https://gist.github.com/50f2e7a94df767601a078892238374d2
du listing: https://gist.github.com/8cc4c4f5d3e152ce51519db7e64d8c62

Outpath report (click to expand)

Outpath difference report
22 total rebuild paths

6 package rebuilds

6 x86_64-linux rebuilds
4 i686-linux rebuilds
6 x86_64-darwin rebuilds
6 aarch64-linux rebuilds

First ten rebuilds by attrpath
python27Packages.fiona
python27Packages.geopandas
python27Packages.osmnx
python36Packages.fiona
python36Packages.geopandas
python36Packages.osmnx

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A python36Packages.fiona https://github.com/r-ryantm/nixpkgs/archive/88ddb4bd89d03834307fc1ce089554824b2b72f1.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2
ls -la /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin

cc @knedlsepp for testing.

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-fiona/versions

knedlsepp · 2018-10-24T15:05:12Z

@GrahamcOfBorg build python3Packages.fiona python3Packages.geopandas python2Packages.fiona python2Packages.geopandas

GrahamcOfBorg · 2018-10-24T15:05:17Z

Success on aarch64-linux (full log)

Attempted: python36Packages.fiona

Partial log (click to expand)

shrinking /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_shim.cpython-36m-aarch64-linux-gnu.so
shrinking /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_transform.cpython-36m-aarch64-linux-gnu.so
shrinking /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/ogrext.cpython-36m-aarch64-linux-gnu.so
shrinking /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/schema.cpython-36m-aarch64-linux-gnu.so
strip is /nix/store/p9akxn2sfy4wkhqdqa3li97pc6jaz3r1-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib  /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/bin
patching script interpreter paths in /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2
checking for references to /build in /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2...
wrapping `/nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/bin/fio'...
/nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2

GrahamcOfBorg · 2018-10-24T15:06:36Z

Success on x86_64-linux (full log)

Attempted: python36Packages.fiona

Partial log (click to expand)

shrinking /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_transform.cpython-36m-x86_64-linux-gnu.so
shrinking /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_err.cpython-36m-x86_64-linux-gnu.so
shrinking /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_geometry.cpython-36m-x86_64-linux-gnu.so
shrinking /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/schema.cpython-36m-x86_64-linux-gnu.so
strip is /nix/store/vcc4svb8gy29g4pam2zja6llkbcwsyiq-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib  /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin
patching script interpreter paths in /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2
checking for references to /build in /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2...
wrapping `/nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin/fio'...
/nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2

GrahamcOfBorg · 2018-10-24T15:08:06Z

Failure on x86_64-linux (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python3Packages.geopandas

Partial log (click to expand)

    other.crs))

geopandas/tests/test_types.py::TestSeries::()::test_select
  /build/source/geopandas/geoseries.py:131: FutureWarning: 'select' is deprecated and will be removed in a future release. You can use .loc[labels.map(crit)] as a replacement
    val = getattr(super(GeoSeries, self), mtd)(*args, **kwargs)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
 44 failed, 198 passed, 6 skipped, 1 deselected, 7 xfailed, 2 warnings, 67 error in 24.30 seconds
builder for '/nix/store/fk2hg2jw7h1v6wdglfvi6in3lzs160wm-python3.6-geopandas-0.4.0.drv' failed with exit code 1
error: build of '/nix/store/fk2hg2jw7h1v6wdglfvi6in3lzs160wm-python3.6-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T15:10:19Z

Failure on x86_64-linux (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python2Packages.geopandas

Partial log (click to expand)

    other.crs))

geopandas/tests/test_types.py::TestSeries::()::test_select
  /build/source/geopandas/geoseries.py:131: FutureWarning: 'select' is deprecated and will be removed in a future release. You can use .loc[labels.map(crit)] as a replacement
    val = getattr(super(GeoSeries, self), mtd)(*args, **kwargs)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
 44 failed, 198 passed, 6 skipped, 1 deselected, 7 xfailed, 2 warnings, 67 error in 56.47 seconds
builder for '/nix/store/k4i6vsx3incpwx3vh73d0d94fvz2aaqw-python2.7-geopandas-0.4.0.drv' failed with exit code 1
error: build of '/nix/store/fk2hg2jw7h1v6wdglfvi6in3lzs160wm-python3.6-geopandas-0.4.0.drv', '/nix/store/k4i6vsx3incpwx3vh73d0d94fvz2aaqw-python2.7-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T15:30:18Z

Failure on aarch64-linux (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python3Packages.geopandas

Partial log (click to expand)

  /nix/store/qfdbglqq4rmjv33y3nhi5qlifgxyg34m-python3.6-pandas-0.23.4/lib/python3.6/site-packages/pandas/core/internals.py:312: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
    return self.values[slicer]
  /nix/store/qfdbglqq4rmjv33y3nhi5qlifgxyg34m-python3.6-pandas-0.23.4/lib/python3.6/site-packages/pandas/core/indexes/datetimelike.py:428: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
    result = getitem(key)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
 5 failed, 16897 passed, 1027 skipped, 11896 deselected, 37 xfailed, 2 xpassed, 10 warnings in 599.91 seconds
builder for '/nix/store/k37vq3id2j6pmwr9dc64gghdk5yidw7x-python3.6-pandas-0.23.4.drv' failed with exit code 1
cannot build derivation '/nix/store/2spjckwpmv7ambb8p3gcqk32v8pqda7w-python3.6-geopandas-0.4.0.drv': 1 dependencies couldn't be built
error: build of '/nix/store/2spjckwpmv7ambb8p3gcqk32v8pqda7w-python3.6-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T15:39:28Z

Success on x86_64-darwin (full log)

Attempted: python36Packages.fiona

Partial log (click to expand)

  The script fio is installed in '/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed Fiona-1.8a2
/private/tmp/nix-build-python3.6-Fiona-1.8a2.drv-0/Fiona-1.8a2
post-installation fixup
strip is /nix/store/g5r4apl0za012ffs6ladinwa5w0m1l3k-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/lib  /nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/bin
patching script interpreter paths in /nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2
wrapping `/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/bin/fio'...
/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2

GrahamcOfBorg · 2018-10-24T15:47:43Z

Failure on x86_64-darwin (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python2Packages.geopandas

Partial log (click to expand)

/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/collection.py:9: in <module>
    from fiona.ogrext import Iterator, ItemsIterator, KeysIterator
E   ImportError: dlopen(/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/ogrext.cpython-36m-darwin.so, 2): Symbol not found: _GEOSArea
E     Referenced from: /nix/store/ya67wf8giha4srkyjjp5l35y1chlcy6m-libspatialite-4.3.0a/lib/libspatialite.7.dylib
E     Expected in: flat namespace
E    in /nix/store/ya67wf8giha4srkyjjp5l35y1chlcy6m-libspatialite-4.3.0a/lib/libspatialite.7.dylib
!!!!!!!!!!!!!!!!!!! Interrupted: 16 errors during collection !!!!!!!!!!!!!!!!!!!
=========================== 16 error in 2.45 seconds ===========================
builder for '/nix/store/5haymjmnwldvwgvxmaqn1m0z639r1gh9-python3.6-geopandas-0.4.0.drv' failed with exit code 2
error: build of '/nix/store/5haymjmnwldvwgvxmaqn1m0z639r1gh9-python3.6-geopandas-0.4.0.drv', '/nix/store/dzlwkhkf5dxcsps5bl87lj08nycnv0xb-python2.7-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T15:54:55Z

Failure on aarch64-linux (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python2Packages.geopandas

Partial log (click to expand)

  /nix/store/qfdbglqq4rmjv33y3nhi5qlifgxyg34m-python3.6-pandas-0.23.4/lib/python3.6/site-packages/pandas/core/internals.py:312: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
    return self.values[slicer]
  /nix/store/qfdbglqq4rmjv33y3nhi5qlifgxyg34m-python3.6-pandas-0.23.4/lib/python3.6/site-packages/pandas/core/indexes/datetimelike.py:428: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
    result = getitem(key)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
 5 failed, 16897 passed, 1027 skipped, 11896 deselected, 37 xfailed, 2 xpassed, 10 warnings in 594.79 seconds
builder for '/nix/store/k37vq3id2j6pmwr9dc64gghdk5yidw7x-python3.6-pandas-0.23.4.drv' failed with exit code 1
cannot build derivation '/nix/store/2spjckwpmv7ambb8p3gcqk32v8pqda7w-python3.6-geopandas-0.4.0.drv': 1 dependencies couldn't be built
error: build of '/nix/store/2spjckwpmv7ambb8p3gcqk32v8pqda7w-python3.6-geopandas-0.4.0.drv', '/nix/store/5y4kwynw6bv4khj0m99w66k4ckcs096r-python2.7-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T16:15:44Z

Timed out, unknown build status on x86_64-darwin (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python3Packages.geopandas

Partial log (click to expand)

#define Py_XDECREF(op) do { if ((op) == NULL) ; else Py_DECREF(op); } while (0)
                                        ^
/nix/store/l928iaj0m48lfb7dib6h7p22d50l566x-clang-wrapper-5.0.2/resource-root/include/stddef.h:100:18: note: expanded from macro 'NULL'
#    define NULL __null
                 ^
building of '/nix/store/mh76vp0g5c1x7h7llfnv7f86f43r7czc-gdal-2.3.2.drv' timed out after 1800 seconds
cannot build derivation '/nix/store/cgapnqxkgsam36fnlx6v9zs2a3k04za4-python2.7-Fiona-1.8a2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/732v56qasgn959c3lgkzd02xqfk8gv32-python3.6-Fiona-1.8a2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/5haymjmnwldvwgvxmaqn1m0z639r1gh9-python3.6-geopandas-0.4.0.drv': 4 dependencies couldn't be built
error: build of '/nix/store/5haymjmnwldvwgvxmaqn1m0z639r1gh9-python3.6-geopandas-0.4.0.drv', '/nix/store/732v56qasgn959c3lgkzd02xqfk8gv32-python3.6-Fiona-1.8a2.drv', '/nix/store/cgapnqxkgsam36fnlx6v9zs2a3k04za4-python2.7-Fiona-1.8a2.drv' failed

globin · 2018-10-28T19:37:28Z

@ryantm, it tried to update to a pre-release?

ryantm · 2018-10-29T07:07:15Z

@globin Repology doesn't know it is a pre-release so that's why, https://repology.org/metapackage/python:fiona/versions I reported the issue there.

python36Packages.fiona: 1.7.13 -> 1.8a2

88ddb4b

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-fiona/versions

r-ryantm requested a review from FRidh as a code owner October 24, 2018 14:52

GrahamcOfBorg added 6.topic: python 10.rebuild-darwin: 1-10 10.rebuild-linux: 1-10 labels Oct 24, 2018

roberth added the 8.has: package (update) label Oct 28, 2018

globin closed this Oct 28, 2018

r-ryantm deleted the auto-update/python3.6-Fiona branch November 17, 2018 23:00

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python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

r-ryantm commented Oct 24, 2018

knedlsepp commented Oct 24, 2018 •

edited

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GrahamcOfBorg commented Oct 24, 2018

globin commented Oct 28, 2018

ryantm commented Oct 29, 2018

python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

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