python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

r-ryantm · 2018-10-24T14:52:02Z

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-fiona/versions.

meta.description for python36Packages.fiona is: '"OGR's neat, nimble, no-nonsense API for Python"'.

Checks done (click to expand)

built on NixOS
/nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin/.fio-wrapped passed the binary check.
/nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin/fio passed the binary check.
2 of 2 passed binary check by having a zero exit code.
2 of 2 passed binary check by having the new version present in output.
found 1.8a2 with grep in /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2
directory tree listing: https://gist.github.com/50f2e7a94df767601a078892238374d2
du listing: https://gist.github.com/8cc4c4f5d3e152ce51519db7e64d8c62

Outpath report (click to expand)

Outpath difference report
22 total rebuild paths

6 package rebuilds

6 x86_64-linux rebuilds
4 i686-linux rebuilds
6 x86_64-darwin rebuilds
6 aarch64-linux rebuilds

First ten rebuilds by attrpath
python27Packages.fiona
python27Packages.geopandas
python27Packages.osmnx
python36Packages.fiona
python36Packages.geopandas
python36Packages.osmnx

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A python36Packages.fiona https://github.com/r-ryantm/nixpkgs/archive/88ddb4bd89d03834307fc1ce089554824b2b72f1.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2
ls -la /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin

cc @knedlsepp for testing.

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-fiona/versions

knedlsepp · 2018-10-24T15:05:12Z

@GrahamcOfBorg build python3Packages.fiona python3Packages.geopandas python2Packages.fiona python2Packages.geopandas

GrahamcOfBorg · 2018-10-24T15:05:17Z

Success on aarch64-linux (full log)

Attempted: python36Packages.fiona

Partial log (click to expand)

shrinking /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_shim.cpython-36m-aarch64-linux-gnu.so
shrinking /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_transform.cpython-36m-aarch64-linux-gnu.so
shrinking /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/ogrext.cpython-36m-aarch64-linux-gnu.so
shrinking /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/schema.cpython-36m-aarch64-linux-gnu.so
strip is /nix/store/p9akxn2sfy4wkhqdqa3li97pc6jaz3r1-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/lib  /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/bin
patching script interpreter paths in /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2
checking for references to /build in /nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2...
wrapping `/nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2/bin/fio'...
/nix/store/125p2a7hydxvsbxf9mlq11a0mv8k61y4-python3.6-Fiona-1.8a2

GrahamcOfBorg · 2018-10-24T15:06:36Z

Success on x86_64-linux (full log)

Attempted: python36Packages.fiona

Partial log (click to expand)

shrinking /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_transform.cpython-36m-x86_64-linux-gnu.so
shrinking /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_err.cpython-36m-x86_64-linux-gnu.so
shrinking /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/_geometry.cpython-36m-x86_64-linux-gnu.so
shrinking /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/schema.cpython-36m-x86_64-linux-gnu.so
strip is /nix/store/vcc4svb8gy29g4pam2zja6llkbcwsyiq-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/lib  /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin
patching script interpreter paths in /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2
checking for references to /build in /nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2...
wrapping `/nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2/bin/fio'...
/nix/store/szas78k22kk54sjly23alcd2lv8sfxay-python3.6-Fiona-1.8a2

GrahamcOfBorg · 2018-10-24T15:08:06Z

Failure on x86_64-linux (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python3Packages.geopandas

Partial log (click to expand)

    other.crs))

geopandas/tests/test_types.py::TestSeries::()::test_select
  /build/source/geopandas/geoseries.py:131: FutureWarning: 'select' is deprecated and will be removed in a future release. You can use .loc[labels.map(crit)] as a replacement
    val = getattr(super(GeoSeries, self), mtd)(*args, **kwargs)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
 44 failed, 198 passed, 6 skipped, 1 deselected, 7 xfailed, 2 warnings, 67 error in 24.30 seconds
builder for '/nix/store/fk2hg2jw7h1v6wdglfvi6in3lzs160wm-python3.6-geopandas-0.4.0.drv' failed with exit code 1
error: build of '/nix/store/fk2hg2jw7h1v6wdglfvi6in3lzs160wm-python3.6-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T15:10:19Z

Failure on x86_64-linux (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python2Packages.geopandas

Partial log (click to expand)

    other.crs))

geopandas/tests/test_types.py::TestSeries::()::test_select
  /build/source/geopandas/geoseries.py:131: FutureWarning: 'select' is deprecated and will be removed in a future release. You can use .loc[labels.map(crit)] as a replacement
    val = getattr(super(GeoSeries, self), mtd)(*args, **kwargs)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
 44 failed, 198 passed, 6 skipped, 1 deselected, 7 xfailed, 2 warnings, 67 error in 56.47 seconds
builder for '/nix/store/k4i6vsx3incpwx3vh73d0d94fvz2aaqw-python2.7-geopandas-0.4.0.drv' failed with exit code 1
error: build of '/nix/store/fk2hg2jw7h1v6wdglfvi6in3lzs160wm-python3.6-geopandas-0.4.0.drv', '/nix/store/k4i6vsx3incpwx3vh73d0d94fvz2aaqw-python2.7-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T15:30:18Z

Failure on aarch64-linux (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python3Packages.geopandas

Partial log (click to expand)

  /nix/store/qfdbglqq4rmjv33y3nhi5qlifgxyg34m-python3.6-pandas-0.23.4/lib/python3.6/site-packages/pandas/core/internals.py:312: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
    return self.values[slicer]
  /nix/store/qfdbglqq4rmjv33y3nhi5qlifgxyg34m-python3.6-pandas-0.23.4/lib/python3.6/site-packages/pandas/core/indexes/datetimelike.py:428: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
    result = getitem(key)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
 5 failed, 16897 passed, 1027 skipped, 11896 deselected, 37 xfailed, 2 xpassed, 10 warnings in 599.91 seconds
builder for '/nix/store/k37vq3id2j6pmwr9dc64gghdk5yidw7x-python3.6-pandas-0.23.4.drv' failed with exit code 1
cannot build derivation '/nix/store/2spjckwpmv7ambb8p3gcqk32v8pqda7w-python3.6-geopandas-0.4.0.drv': 1 dependencies couldn't be built
error: build of '/nix/store/2spjckwpmv7ambb8p3gcqk32v8pqda7w-python3.6-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T15:39:28Z

Success on x86_64-darwin (full log)

Attempted: python36Packages.fiona

Partial log (click to expand)

  The script fio is installed in '/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed Fiona-1.8a2
/private/tmp/nix-build-python3.6-Fiona-1.8a2.drv-0/Fiona-1.8a2
post-installation fixup
strip is /nix/store/g5r4apl0za012ffs6ladinwa5w0m1l3k-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/lib  /nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/bin
patching script interpreter paths in /nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2
wrapping `/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/bin/fio'...
/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2

GrahamcOfBorg · 2018-10-24T15:47:43Z

Failure on x86_64-darwin (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python2Packages.geopandas

Partial log (click to expand)

/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/collection.py:9: in <module>
    from fiona.ogrext import Iterator, ItemsIterator, KeysIterator
E   ImportError: dlopen(/nix/store/v2w0ngplr3szb4gq7crry7is2n188jlr-python3.6-Fiona-1.8a2/lib/python3.6/site-packages/fiona/ogrext.cpython-36m-darwin.so, 2): Symbol not found: _GEOSArea
E     Referenced from: /nix/store/ya67wf8giha4srkyjjp5l35y1chlcy6m-libspatialite-4.3.0a/lib/libspatialite.7.dylib
E     Expected in: flat namespace
E    in /nix/store/ya67wf8giha4srkyjjp5l35y1chlcy6m-libspatialite-4.3.0a/lib/libspatialite.7.dylib
!!!!!!!!!!!!!!!!!!! Interrupted: 16 errors during collection !!!!!!!!!!!!!!!!!!!
=========================== 16 error in 2.45 seconds ===========================
builder for '/nix/store/5haymjmnwldvwgvxmaqn1m0z639r1gh9-python3.6-geopandas-0.4.0.drv' failed with exit code 2
error: build of '/nix/store/5haymjmnwldvwgvxmaqn1m0z639r1gh9-python3.6-geopandas-0.4.0.drv', '/nix/store/dzlwkhkf5dxcsps5bl87lj08nycnv0xb-python2.7-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T15:54:55Z

Failure on aarch64-linux (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python2Packages.geopandas

Partial log (click to expand)

  /nix/store/qfdbglqq4rmjv33y3nhi5qlifgxyg34m-python3.6-pandas-0.23.4/lib/python3.6/site-packages/pandas/core/internals.py:312: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
    return self.values[slicer]
  /nix/store/qfdbglqq4rmjv33y3nhi5qlifgxyg34m-python3.6-pandas-0.23.4/lib/python3.6/site-packages/pandas/core/indexes/datetimelike.py:428: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
    result = getitem(key)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
 5 failed, 16897 passed, 1027 skipped, 11896 deselected, 37 xfailed, 2 xpassed, 10 warnings in 594.79 seconds
builder for '/nix/store/k37vq3id2j6pmwr9dc64gghdk5yidw7x-python3.6-pandas-0.23.4.drv' failed with exit code 1
cannot build derivation '/nix/store/2spjckwpmv7ambb8p3gcqk32v8pqda7w-python3.6-geopandas-0.4.0.drv': 1 dependencies couldn't be built
error: build of '/nix/store/2spjckwpmv7ambb8p3gcqk32v8pqda7w-python3.6-geopandas-0.4.0.drv', '/nix/store/5y4kwynw6bv4khj0m99w66k4ckcs096r-python2.7-geopandas-0.4.0.drv' failed

GrahamcOfBorg · 2018-10-24T16:15:44Z

Timed out, unknown build status on x86_64-darwin (full log)

Attempted: python3Packages.fiona, python3Packages.geopandas, python2Packages.fiona, python3Packages.geopandas

Partial log (click to expand)

#define Py_XDECREF(op) do { if ((op) == NULL) ; else Py_DECREF(op); } while (0)
                                        ^
/nix/store/l928iaj0m48lfb7dib6h7p22d50l566x-clang-wrapper-5.0.2/resource-root/include/stddef.h:100:18: note: expanded from macro 'NULL'
#    define NULL __null
                 ^
building of '/nix/store/mh76vp0g5c1x7h7llfnv7f86f43r7czc-gdal-2.3.2.drv' timed out after 1800 seconds
cannot build derivation '/nix/store/cgapnqxkgsam36fnlx6v9zs2a3k04za4-python2.7-Fiona-1.8a2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/732v56qasgn959c3lgkzd02xqfk8gv32-python3.6-Fiona-1.8a2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/5haymjmnwldvwgvxmaqn1m0z639r1gh9-python3.6-geopandas-0.4.0.drv': 4 dependencies couldn't be built
error: build of '/nix/store/5haymjmnwldvwgvxmaqn1m0z639r1gh9-python3.6-geopandas-0.4.0.drv', '/nix/store/732v56qasgn959c3lgkzd02xqfk8gv32-python3.6-Fiona-1.8a2.drv', '/nix/store/cgapnqxkgsam36fnlx6v9zs2a3k04za4-python2.7-Fiona-1.8a2.drv' failed

globin · 2018-10-28T19:37:28Z

@ryantm, it tried to update to a pre-release?

ryantm · 2018-10-29T07:07:15Z

@globin Repology doesn't know it is a pre-release so that's why, https://repology.org/metapackage/python:fiona/versions I reported the issue there.

python36Packages.fiona: 1.7.13 -> 1.8a2

88ddb4b

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-fiona/versions

r-ryantm requested a review from FRidh as a code owner October 24, 2018 14:52

GrahamcOfBorg added 6.topic: python 10.rebuild-darwin: 1-10 10.rebuild-linux: 1-10 labels Oct 24, 2018

roberth added the 8.has: package (update) label Oct 28, 2018

globin closed this Oct 28, 2018

r-ryantm deleted the auto-update/python3.6-Fiona branch November 17, 2018 23:00

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

r-ryantm commented Oct 24, 2018

knedlsepp commented Oct 24, 2018 •

edited

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

globin commented Oct 28, 2018

ryantm commented Oct 29, 2018

python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

python36Packages.fiona: 1.7.13 -> 1.8a2 #49021

Conversation

r-ryantm commented Oct 24, 2018

knedlsepp commented Oct 24, 2018 • edited

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

GrahamcOfBorg commented Oct 24, 2018

globin commented Oct 28, 2018

ryantm commented Oct 29, 2018

knedlsepp commented Oct 24, 2018 •

edited