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openmpi: 3.1.2 -> 3.1.3 #50164

Merged
merged 2 commits into from Nov 13, 2018
Merged

openmpi: 3.1.2 -> 3.1.3 #50164

merged 2 commits into from Nov 13, 2018

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markuskowa
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@markuskowa markuskowa commented Nov 10, 2018 •
edited

Motivation for this change

Minor update. Refactor version string so that it can be picked up by the auto updater in the future.

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Fits CONTRIBUTING.md.

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Success on x86_64-linux (full log)

Attempted: openmpi

Partial log (click to expand)

shrinking /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin/orterun
shrinking /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin/orte-ps
shrinking /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin/prun
shrinking /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin/ompi_info
gzipping man pages under /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/share/man/
strip is /nix/store/vcc4svb8gy29g4pam2zja6llkbcwsyiq-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/lib  /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin
patching script interpreter paths in /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3
checking for references to /build in /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3...
/nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3

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@GrahamcOfBorg build python36Packages.mpi4py

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Success on x86_64-linux (full log)

Attempted: python36Packages.mpi4py

Partial log (click to expand)

capable network such as Infiniband.
--------------------------------------------------------------------------
....s........................................ssssssss.........................................................................................................................................................................................................................................................ssssssssssssssssssssssss..........................................................ss...................................................................ssssssssssss............................................................sss....................s............................................sssss..........................................................................................................................................ssssss...........ssssss......s...s........................................................................................................................................s...ss............ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss.........................................ss.........................................ssssssssssssssssssssssssssssssssssssss
----------------------------------------------------------------------
Ran 1134 tests in 3.764s

OK (skipped=201)
[localhost:01373] 7 more processes have sent help message help-osc-pt2pt.txt / mpi-thread-multiple-not-supported
[localhost:01373] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
/nix/store/k0s3srpanljsq8x18vwhwcl9ppn8l00q-python3.6-mpi4py-3.0.0

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Success on x86_64-darwin (full log)

Attempted: openmpi

Partial log (click to expand)

make[3]: Leaving directory '/private/tmp/nix-build-openmpi-3.1.3.drv-0/openmpi-3.1.3'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/private/tmp/nix-build-openmpi-3.1.3.drv-0/openmpi-3.1.3'
make[1]: Leaving directory '/private/tmp/nix-build-openmpi-3.1.3.drv-0/openmpi-3.1.3'
post-installation fixup
gzipping man pages under /nix/store/clmxj8w3kq9qggl16hhggdfqk4xi91da-openmpi-3.1.3/share/man/
strip is /nix/store/g5r4apl0za012ffs6ladinwa5w0m1l3k-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/clmxj8w3kq9qggl16hhggdfqk4xi91da-openmpi-3.1.3/lib  /nix/store/clmxj8w3kq9qggl16hhggdfqk4xi91da-openmpi-3.1.3/bin
patching script interpreter paths in /nix/store/clmxj8w3kq9qggl16hhggdfqk4xi91da-openmpi-3.1.3
/nix/store/clmxj8w3kq9qggl16hhggdfqk4xi91da-openmpi-3.1.3

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Success on x86_64-darwin (full log)

Attempted: python36Packages.mpi4py

Partial log (click to expand)

capable network such as Infiniband.
--------------------------------------------------------------------------
....s........................................ssssssss.........................................................................................................................................................................................................................................................ssssssssssssssssssssssss..........................................................ss...................................................................ssssssssssss............................................................sss....................s............................................sssss..........................................................................................................................................ssssss...........ssssss......s...s........................................................................................................................................s...ss............ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss.........................................ss.........................................ssssssssssssssssssssssssssssssssssssss
----------------------------------------------------------------------
Ran 1134 tests in 2.572s

OK (skipped=201)
[Daiderd-Jordans-Mac.local:62564] 7 more processes have sent help message help-osc-pt2pt.txt / mpi-thread-multiple-not-supported
[Daiderd-Jordans-Mac.local:62564] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
/nix/store/xa0zhmbb25k6cldldpp3dc1lwgvgg5d0-python3.6-mpi4py-3.0.0

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timokau commented Nov 10, 2018

This isn't a blocker and I'm fine with merging this as-is, but if you refactor it to use a standard version attribute r-ryantm could do these updates in the future.

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Timed out, unknown build status on aarch64-linux (full log)

Attempted: python36Packages.mpi4py

Partial log (click to expand)

cannot build derivation '/nix/store/by5p7vlw6p1hsixyliy85dim5r8xqzq5-conduit-1.3.1.drv': 14 dependencies couldn't be built
cannot build derivation '/nix/store/q3pv07v48jyh8qzgpm1r8wjv6yc5va57-tls-1.4.1.drv': 17 dependencies couldn't be built
cannot build derivation '/nix/store/x94qhdgjjn6pi5zhcnbxp6csmndvyvrh-connection-0.2.8.drv': 11 dependencies couldn't be built
cannot build derivation '/nix/store/793ymrxpa1nmc0h9qbyb705hzaqpc6aa-yaml-0.8.32.drv': 15 dependencies couldn't be built
cannot build derivation '/nix/store/qcpay92v35qx4jgpckq7krz513ah3sdv-http-client-tls-0.3.5.3.drv': 13 dependencies couldn't be built
cannot build derivation '/nix/store/a1snaj0bpwzl00skil0a6xz97i0mkilf-pandoc-2.2.1.drv': 40 dependencies couldn't be built
cannot build derivation '/nix/store/2r6n4ij8p62869sx23fkhd6w9jy9nmap-rdma-core-20.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/x38q8kad14rcvwi2n06k5l2pshawsw70-openmpi-3.1.3.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/wi79h2mvp1asjnwswkhf1l962g6cacrq-python3.6-mpi4py-3.0.0.drv': 1 dependencies couldn't be built
error: build of '/nix/store/wi79h2mvp1asjnwswkhf1l962g6cacrq-python3.6-mpi4py-3.0.0.drv' failed

@markuskowa
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@timokau Thanks for pointing that out. That should work for the auto updater?

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Success on x86_64-darwin (full log)

Attempted: openmpi

Partial log (click to expand)

/nix/store/clmxj8w3kq9qggl16hhggdfqk4xi91da-openmpi-3.1.3

timokau
timokau approved these changes Nov 10, 2018
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I think it should. As far as I know it basically greps for the current version string and replaces that with the new version.

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Success on x86_64-linux (full log)

Attempted: openmpi

Partial log (click to expand)

shrinking /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin/orterun
shrinking /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin/orte-ps
shrinking /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin/prun
shrinking /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin/ompi_info
gzipping man pages under /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/share/man/
strip is /nix/store/vcc4svb8gy29g4pam2zja6llkbcwsyiq-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/lib  /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3/bin
patching script interpreter paths in /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3
checking for references to /build in /nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3...
/nix/store/ys0zaa30qm2h46iac99af87w8w7bfywq-openmpi-3.1.3

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Timed out, unknown build status on aarch64-linux (full log)

Attempted: openmpi

Partial log (click to expand)

cannot build derivation '/nix/store/8y1jjk4zi6qn8wxlrgin67wa9mpsl8ng-x509-validation-1.6.11.drv': 13 dependencies couldn't be built
cannot build derivation '/nix/store/by5p7vlw6p1hsixyliy85dim5r8xqzq5-conduit-1.3.1.drv': 14 dependencies couldn't be built
cannot build derivation '/nix/store/q3pv07v48jyh8qzgpm1r8wjv6yc5va57-tls-1.4.1.drv': 17 dependencies couldn't be built
cannot build derivation '/nix/store/x94qhdgjjn6pi5zhcnbxp6csmndvyvrh-connection-0.2.8.drv': 11 dependencies couldn't be built
cannot build derivation '/nix/store/793ymrxpa1nmc0h9qbyb705hzaqpc6aa-yaml-0.8.32.drv': 15 dependencies couldn't be built
cannot build derivation '/nix/store/qcpay92v35qx4jgpckq7krz513ah3sdv-http-client-tls-0.3.5.3.drv': 13 dependencies couldn't be built
cannot build derivation '/nix/store/a1snaj0bpwzl00skil0a6xz97i0mkilf-pandoc-2.2.1.drv': 40 dependencies couldn't be built
cannot build derivation '/nix/store/2r6n4ij8p62869sx23fkhd6w9jy9nmap-rdma-core-20.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/x38q8kad14rcvwi2n06k5l2pshawsw70-openmpi-3.1.3.drv': 1 dependencies couldn't be built
error: build of '/nix/store/x38q8kad14rcvwi2n06k5l2pshawsw70-openmpi-3.1.3.drv' failed

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aarch64 build fails the ghc dependency

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Timed out, unknown build status on aarch64-linux (full log)

Attempted: openmpi

Partial log (click to expand)

cannot build derivation '/nix/store/8y1jjk4zi6qn8wxlrgin67wa9mpsl8ng-x509-validation-1.6.11.drv': 13 dependencies couldn't be built
cannot build derivation '/nix/store/by5p7vlw6p1hsixyliy85dim5r8xqzq5-conduit-1.3.1.drv': 14 dependencies couldn't be built
cannot build derivation '/nix/store/q3pv07v48jyh8qzgpm1r8wjv6yc5va57-tls-1.4.1.drv': 17 dependencies couldn't be built
cannot build derivation '/nix/store/x94qhdgjjn6pi5zhcnbxp6csmndvyvrh-connection-0.2.8.drv': 11 dependencies couldn't be built
cannot build derivation '/nix/store/793ymrxpa1nmc0h9qbyb705hzaqpc6aa-yaml-0.8.32.drv': 15 dependencies couldn't be built
cannot build derivation '/nix/store/qcpay92v35qx4jgpckq7krz513ah3sdv-http-client-tls-0.3.5.3.drv': 13 dependencies couldn't be built
cannot build derivation '/nix/store/a1snaj0bpwzl00skil0a6xz97i0mkilf-pandoc-2.2.1.drv': 40 dependencies couldn't be built
cannot build derivation '/nix/store/2r6n4ij8p62869sx23fkhd6w9jy9nmap-rdma-core-20.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/x38q8kad14rcvwi2n06k5l2pshawsw70-openmpi-3.1.3.drv': 1 dependencies couldn't be built
error: build of '/nix/store/x38q8kad14rcvwi2n06k5l2pshawsw70-openmpi-3.1.3.drv' failed

@markuskowa markuskowa merged commit 8c11e30 into NixOS:master Nov 13, 2018
@markuskowa markuskowa deleted the upd-openmpi branch November 13, 2018 09:37
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