python36Packages.ase: 3.16.2 -> 3.17.0 #50645

r-ryantm · 2018-11-18T23:27:13Z

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-ase/versions.

meta.description for python36Packages.ase is: '"Atomic Simulation Environment"'.

Checks done (click to expand)

built on NixOS
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/.ase-wrapped passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/.ase-build-wrapped passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-build passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/.ase-db-wrapped passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-db passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/.ase-gui-wrapped passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-gui passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/.ase-info-wrapped passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-info passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/.ase-run-wrapped passed the binary check.
/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-run passed the binary check.
12 of 12 passed binary check by having a zero exit code.
2 of 12 passed binary check by having the new version present in output.
found 3.17.0 with grep in /nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0
directory tree listing: https://gist.github.com/7a947b16b8ca3cb1da444742b4c5cf04
du listing: https://gist.github.com/f92948b496dee5d1b60cf321d98d0abd

Rebuild report (click to expand)

19 total rebuild path(s)

5 package rebuild(s)

5 x86_64-linux rebuild(s)
4 i686-linux rebuild(s)
5 x86_64-darwin rebuild(s)
5 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
python27Packages.ase
python36Packages.ase
python36Packages.boltztrap2
python36Packages.dftfit
python36Packages.lammps-cython

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A python36Packages.ase https://github.com/r-ryantm/nixpkgs/archive/1d417463e2bf7752c6b4385d0bc750c8874f9605.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0
ls -la /nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin

cc @costrouc for testing.

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-ase/versions

GrahamcOfBorg · 2018-11-18T23:48:06Z

Success on x86_64-linux (full log)

Attempted: python36Packages.ase

Partial log (click to expand)

patching script interpreter paths in /nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0
checking for references to /build in /nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0...
wrapping `/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-info'...
wrapping `/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-db'...
wrapping `/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-gui'...
wrapping `/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-build'...
wrapping `/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase'...
wrapping `/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/bin/ase-run'...
cannot link '/nix/store/.links/1yfiyxzxx6as9h19brbr5jypa68cm91x0jlj1kgijf3r9rkdin1i' to '/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/lib/python3.6/site-packages/ase/utils/timing.py': No space left on device
cannot link '/nix/store/.links/0qa5y663icvmwqawn9xr85l40dnswmrjzczda5p3vz3km0xvaznz' to '/nix/store/2vy3pl44jrzj45kx10nndyk7zbpd6cy6-python3.6-ase-3.17.0/lib/python3.6/site-packages/ase/db/__pycache__/__init__.cpython-36.pyc': No space left on device

GrahamcOfBorg · 2018-11-18T23:48:09Z

Success on aarch64-linux (full log)

Attempted: python36Packages.ase

Partial log (click to expand)

strip is /nix/store/p9akxn2sfy4wkhqdqa3li97pc6jaz3r1-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0/lib  /nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0/bin
patching script interpreter paths in /nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0
checking for references to /build in /nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0...
wrapping `/nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0/bin/ase-run'...
wrapping `/nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0/bin/ase-info'...
wrapping `/nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0/bin/ase-gui'...
wrapping `/nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0/bin/ase-db'...
wrapping `/nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0/bin/ase-build'...
wrapping `/nix/store/brbhn5dak7kmkak4x31dmm89iir0lyz7-python3.6-ase-3.17.0/bin/ase'...

GrahamcOfBorg · 2018-11-18T23:48:12Z

Success on x86_64-darwin (full log)

Attempted: python36Packages.ase

Partial log (click to expand)

post-installation fixup
strip is /nix/store/g5r4apl0za012ffs6ladinwa5w0m1l3k-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0/lib  /nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0/bin
patching script interpreter paths in /nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0
wrapping `/nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0/bin/ase'...
wrapping `/nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0/bin/ase-build'...
wrapping `/nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0/bin/ase-db'...
wrapping `/nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0/bin/ase-gui'...
wrapping `/nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0/bin/ase-info'...
wrapping `/nix/store/dvhc9bgil2jc64pfc2dlhzvs0qqriz2i-python3.6-ase-3.17.0/bin/ase-run'...

worldofpeace · 2018-11-26T01:08:38Z

@GrahamcOfBorg build python3Packages.boltztrap2 python3Packages.dftfit python3Packages.lammps-cython pythonPackages.boltztrap2 pythonPackages.dftfit pythonPackages.lammps-cython

GrahamcOfBorg · 2018-11-26T01:11:13Z

Unexpected error: unexpected build failure on aarch64-linux (full log)

Attempted: python3Packages.boltztrap2, python3Packages.dftfit, python3Packages.lammps-cython

The following builds were skipped because they don't evaluate on aarch64-linux: pythonPackages.boltztrap2, pythonPackages.dftfit, pythonPackages.lammps-cython

Partial log (click to expand)

creating build/bdist.linux-aarch64/wheel/libfuturize
creating build/bdist.linux-aarch64/wheel/libfuturize/fixes
copying build/lib/libfuturize/fixes/__init__.py -> build/bdist.linux-aarch64/wheel/libfuturize/fixes
copying build/lib/libfuturize/fixes/fix_absolute_import.py -> build/bdist.linux-aarch64/wheel/libfuturize/fixes
copying build/lib/libfuturize/fixes/fix_add__future__imports_except_unicode_literals.py -> build/bdist.linux-aarch64/wheel/libfuturize/fixes
copying build/lib/libfuturize/fixes/fix_basestring.py -> build/bdist.linux-aarch64/wheel/libfuturize/fixes
copying build/lib/libfuturize/fixes/fix_bytes.py -> build/bdist.linux-aarch64/wheel/libfuturize/fixes
copying build/lib/libfuturize/fixes/fix_cmp.py -> build/bdist.linux-aarch64/wheel/libfuturize/fixes
copying build/lib/libfuturize/fixes/fix_division.py -> build/bdist.linux-aarch64/wheel/libfuturize/fixes
copying build/lib/libfuturize/fixes/fix_division_safe.py -> build/bdist.linux-aarch64/wheel/libfuturize/fixes

GrahamcOfBorg · 2018-11-26T04:35:26Z

Timed out, unknown build status on x86_64-linux (full log)

Attempted: python3Packages.boltztrap2, python3Packages.dftfit, python3Packages.lammps-cython

The following builds were skipped because they don't evaluate on x86_64-linux: pythonPackages.boltztrap2, pythonPackages.dftfit, pythonPackages.lammps-cython

Partial log (click to expand)

strip is /nix/store/n4hb93w6j076xcjw5pm09rdmc09s075b-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/m4cc4sfv4ndn68a37xz3brwhf4876kiq-python3.7-ipyparallel-6.2.3/lib  /nix/store/m4cc4sfv4ndn68a37xz3brwhf4876kiq-python3.7-ipyparallel-6.2.3/bin
patching script interpreter paths in /nix/store/m4cc4sfv4ndn68a37xz3brwhf4876kiq-python3.7-ipyparallel-6.2.3
checking for references to /build in /nix/store/m4cc4sfv4ndn68a37xz3brwhf4876kiq-python3.7-ipyparallel-6.2.3...
wrapping `/nix/store/m4cc4sfv4ndn68a37xz3brwhf4876kiq-python3.7-ipyparallel-6.2.3/bin/ipengine'...
wrapping `/nix/store/m4cc4sfv4ndn68a37xz3brwhf4876kiq-python3.7-ipyparallel-6.2.3/bin/ipcontroller'...
wrapping `/nix/store/m4cc4sfv4ndn68a37xz3brwhf4876kiq-python3.7-ipyparallel-6.2.3/bin/ipcluster'...
cannot build derivation '/nix/store/xwc6sqh6c75s8fd20zxpjhahyarsbqz5-python3.7-pygmo-2.8.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/4qvhl6pxj31pfyc1fmn5z3zkpbwjfs0g-python3.7-dftfit-0.4.22.drv': 5 dependencies couldn't be built
error: build of '/nix/store/42gklci4g629f4g6inz0six3mab14f96-python3.7-lammps-cython-0.5.7.drv', '/nix/store/4qvhl6pxj31pfyc1fmn5z3zkpbwjfs0g-python3.7-dftfit-0.4.22.drv' failed

c0bw3b · 2018-11-29T13:49:55Z

@GrahamcOfBorg build python2Packages.dftfit python3Packages.dftfit

GrahamcOfBorg · 2018-11-29T13:50:21Z

No attempt on x86_64-darwin (full log)

The following builds were skipped because they don't evaluate on x86_64-darwin: python2Packages.dftfit, python3Packages.dftfit

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

GrahamcOfBorg · 2018-11-29T13:55:15Z

Failure on x86_64-linux (full log)

Attempted: python3Packages.dftfit

The following builds were skipped because they don't evaluate on x86_64-linux: python2Packages.dftfit

Partial log (click to expand)

             ^~~~~~~~~~~~~
             curexc_traceback
error: command 'gcc' failed with exit status 1
builder for '/nix/store/8iw3x4x13gm685kc1r34bbqdi9cx89y8-python3.7-ruamel.yaml-0.15.35.drv' failed with exit code 1
cannot build derivation '/nix/store/jbvgs6vkf5ky0cydz8ygjzx61lgyb21c-python3.7-monty-1.0.2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/04x9mqxjqvljhv5cknb1y1yikm4ayga7-python3.7-pymatgen-2018.9.30.drv': 2 dependencies couldn't be built
cannot build derivation '/nix/store/h2zs4n6625sqscagvfz9ykrl75c86pj6-python3.7-lammps-cython-0.5.7.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/7sfx12rbhbq60sv5h0ffpxy460wlixgd-python3.7-pymatgen-lammps-0.4.5.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/0rj1paiy3immyzcs07g36c4yhi50524z-python3.7-dftfit-0.4.22.drv': 4 dependencies couldn't be built
error: build of '/nix/store/0rj1paiy3immyzcs07g36c4yhi50524z-python3.7-dftfit-0.4.22.drv' failed

GrahamcOfBorg · 2018-11-29T14:48:43Z

Failure on aarch64-linux (full log)

Attempted: python3Packages.dftfit

The following builds were skipped because they don't evaluate on aarch64-linux: python2Packages.dftfit

Partial log (click to expand)

cannot build derivation '/nix/store/rshdxqhzzx7rr09mwfqzawf7v39cbxkf-yaml-0.8.32.drv': 15 dependencies couldn't be built
cannot build derivation '/nix/store/vbxbifi73wbyhakvrlhgk37143w2m77k-http-client-tls-0.3.5.3.drv': 13 dependencies couldn't be built
cannot build derivation '/nix/store/k8sygj23p7xy2nah84lvbhqlkfny3pvp-pandoc-2.2.1.drv': 40 dependencies couldn't be built
cannot build derivation '/nix/store/98n83xfrnqb63armqk98pv2m84yhc00w-rdma-core-21.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/ggmdrbpinazfj4m61dy1vyc4x3j5w5w5-openmpi-3.1.3.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/f89ka1gcna33mvih2paqznygilc401cb-lammps-stable_22Aug2018.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/n3ql8rl9bd46kb1zk7d95jhrmfhqhyh1-python3.7-mpi4py-3.0.0.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/8ffybnplds4b43wkj85i0khch50scnkb-python3.7-lammps-cython-0.5.7.drv': 4 dependencies couldn't be built
cannot build derivation '/nix/store/j7nc3wgj1v69yi081pjj2pksl7kpjnr0-python3.7-dftfit-0.4.22.drv': 4 dependencies couldn't be built
error: build of '/nix/store/j7nc3wgj1v69yi081pjj2pksl7kpjnr0-python3.7-dftfit-0.4.22.drv' failed

costrouc · 2018-11-29T14:53:02Z

I will fix dftfit later today

dotlambda · 2018-12-18T14:07:59Z

included in #51959

python36Packages.ase: 3.16.2 -> 3.17.0

1d41746

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python3.6-ase/versions

r-ryantm requested a review from FRidh as a code owner November 18, 2018 23:27

GrahamcOfBorg added 6.topic: python 10.rebuild-darwin: 1-10 10.rebuild-linux: 1-10 labels Nov 18, 2018

costrouc mentioned this pull request Dec 2, 2018

pagmo2, pythonPackages.pygmo refactor fix broken packages #51399

Closed

10 tasks

worldofpeace self-assigned this Dec 6, 2018

worldofpeace mentioned this pull request Dec 13, 2018

pagmo2, pythonPackages.pygmo fixes #51959

Merged

dotlambda mentioned this pull request Dec 16, 2018

python37Packages.ase: 3.16.2 -> 3.17.0 #52130

Closed

dotlambda closed this Dec 18, 2018

r-ryantm deleted the auto-update/python3.6-ase branch December 24, 2018 04:50

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python36Packages.ase: 3.16.2 -> 3.17.0 #50645

python36Packages.ase: 3.16.2 -> 3.17.0 #50645

r-ryantm commented Nov 18, 2018

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worldofpeace commented Nov 26, 2018

GrahamcOfBorg commented Nov 26, 2018

GrahamcOfBorg commented Nov 26, 2018

c0bw3b commented Nov 29, 2018

GrahamcOfBorg commented Nov 29, 2018

GrahamcOfBorg commented Nov 29, 2018

GrahamcOfBorg commented Nov 29, 2018

costrouc commented Nov 29, 2018

dotlambda commented Dec 18, 2018

python36Packages.ase: 3.16.2 -> 3.17.0 #50645

python36Packages.ase: 3.16.2 -> 3.17.0 #50645

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r-ryantm commented Nov 18, 2018

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worldofpeace commented Nov 26, 2018

GrahamcOfBorg commented Nov 26, 2018

GrahamcOfBorg commented Nov 26, 2018

c0bw3b commented Nov 29, 2018

GrahamcOfBorg commented Nov 29, 2018

GrahamcOfBorg commented Nov 29, 2018

GrahamcOfBorg commented Nov 29, 2018

costrouc commented Nov 29, 2018

dotlambda commented Dec 18, 2018