NixOS · Nov 5, 2018 · Nov 5, 2018 · Nov 7, 2018 · Nov 7, 2018 · Nov 8, 2018
diff --git a/pkgs/applications/science/machine-learning/shogun/default.nix b/pkgs/applications/science/machine-learning/shogun/default.nix
@@ -2,9 +2,9 @@
 # data, compression
 , bzip2, curl, hdf5, json_c, lzma, lzo, protobuf, snappy
 # maths
-, blas, eigen, nlopt, lp_solve, colpack
+, openblasCompat, eigen, nlopt, lp_solve, colpack
 # libraries
-, libarchive, liblapack, libxml2
+, libarchive, libxml2
 # extra support
 , pythonSupport ? true, pythonPackages ? null
 , opencvSupport ? false, opencv ? null
@@ -41,8 +41,8 @@ stdenv.mkDerivation rec {
   CCACHE_DIR=".ccache";
 
   buildInputs = with lib; [
-      blas bzip2 ccache cmake colpack curl ctags eigen hdf5 json_c lp_solve lzma lzo
-      protobuf nlopt snappy swig (libarchive.dev) liblapack libxml2
+      openblasCompat bzip2 ccache cmake colpack curl ctags eigen hdf5 json_c lp_solve lzma lzo
+      protobuf nlopt snappy swig (libarchive.dev) libxml2
     ]
     ++ optionals (pythonSupport) (with pythonPackages; [ python ply numpy ])
     ++ optional  (opencvSupport) opencv;

diff --git a/pkgs/applications/science/math/colpack/default.nix b/pkgs/applications/science/math/colpack/default.nix
@@ -25,6 +25,7 @@ stdenv.mkDerivation rec {
     vertex coloring and derivative computation";
     homepage = "http://cscapes.cs.purdue.edu/coloringpage/software.htm#functionalities";
     license = licenses.lgpl3;
+    platforms = platforms.linux;
     maintainers = with maintainers; [ edwtjo ];
   };
 

diff --git a/pkgs/applications/science/math/giac/default.nix b/pkgs/applications/science/math/giac/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, fetchpatch, texlive, bison, flex, liblapackWithoutAtlas
+{ stdenv, fetchurl, fetchpatch, texlive, bison, flex, liblapack
 , gmp, mpfr, pari, ntl, gsl, blas, mpfi
 , readline, gettext, libpng, libao, gfortran, perl
 , enableGUI ? false, libGLU_combined ? null, xorg ? null, fltk ? null
@@ -42,7 +42,7 @@ stdenv.mkDerivation rec {
     # gfortran.cc default output contains static libraries compiled without -fPIC
     # we want libgfortran.so.3 instead
     (stdenv.lib.getLib gfortran.cc)
-    liblapackWithoutAtlas
+    liblapack
   ] ++ stdenv.lib.optionals enableGUI [
     libGLU_combined fltk xorg.libX11
   ];

diff --git a/pkgs/applications/science/physics/xfitter/default.nix b/pkgs/applications/science/physics/xfitter/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, apfel, apfelgrid, applgrid, blas, gfortran, lhapdf, liblapackWithoutAtlas, libyaml, lynx, mela, root5, qcdnum, which }:
+{ stdenv, fetchurl, apfel, apfelgrid, applgrid, blas, gfortran, lhapdf, liblapack, libyaml, lynx, mela, root5, qcdnum, which }:
 
 stdenv.mkDerivation rec {
   name = "xfitter-${version}";
@@ -34,7 +34,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ gfortran which ];
   buildInputs =
-    [ apfel apfelgrid applgrid blas lhapdf liblapackWithoutAtlas mela root5 qcdnum ]
+    [ apfel apfelgrid applgrid blas lhapdf liblapack mela root5 qcdnum ]
     # pdf2yaml requires fmemopen and open_memstream which are not readily available on Darwin
     ++ stdenv.lib.optional (!stdenv.isDarwin) libyaml
     ;

diff --git a/pkgs/development/libraries/science/math/atlas/default.nix b/pkgs/development/libraries/science/math/atlas/default.nix
diff --git a/pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch b/pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch