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igv: 2.4.14 -> 2.4.15 #50087

Merged
merged 1 commit into from Nov 10, 2018
Merged

igv: 2.4.14 -> 2.4.15 #50087

merged 1 commit into from Nov 10, 2018

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r-ryantm
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@r-ryantm r-ryantm commented Nov 9, 2018

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/igv/versions.

meta.description for igv is: '"A visualization tool for interactive exploration of genomic datasets"'.

Checks done (click to expand)
Outpath report (click to expand)

Outpath difference report
4 total rebuild paths

1 package rebuilds

1 x86_64-linux rebuilds
1 i686-linux rebuilds
1 x86_64-darwin rebuilds
1 aarch64-linux rebuilds

First ten rebuilds by attrpath
igv

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A igv https://github.com/r-ryantm/nixpkgs/archive/df9f999c2743f991d546ba95193b5b3028ea656f.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15
ls -la /nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15/bin

cc @mimadrid for testing.

@r-ryantm
igv: 2.4.14 -> 2.4.15
df9f999 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
@GrahamcOfBorg
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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: igv

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: igv

Partial log (click to expand)

'readme.txt' -> '/nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15/share/readme.txt'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15
strip is /nix/store/vcc4svb8gy29g4pam2zja6llkbcwsyiq-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15/bin
patching script interpreter paths in /nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15
/nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/r47p5pzx52m3n34vdgqpk5rvqgm0m24m-bash-4.4-p23/bin/sh"
/nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/r47p5pzx52m3n34vdgqpk5rvqgm0m24m-bash-4.4-p23/bin/sh"
checking for references to /build in /nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15...
/nix/store/c85mqb6qi200c1falf8glgvj3bb9lva1-igv-2.4.15

@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: igv

Partial log (click to expand)

'lib/batik-codec-1.10.jar' -> '/nix/store/8f51drx5yn8w869l7mg0qi07jniv8ywv-igv-2.4.15/share/lib/batik-codec-1.10.jar'
'lib/log4j-core-2.11.0.jar' -> '/nix/store/8f51drx5yn8w869l7mg0qi07jniv8ywv-igv-2.4.15/share/lib/log4j-core-2.11.0.jar'
'readme.txt' -> '/nix/store/8f51drx5yn8w869l7mg0qi07jniv8ywv-igv-2.4.15/share/readme.txt'
post-installation fixup
strip is /nix/store/g5r4apl0za012ffs6ladinwa5w0m1l3k-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/8f51drx5yn8w869l7mg0qi07jniv8ywv-igv-2.4.15/bin
patching script interpreter paths in /nix/store/8f51drx5yn8w869l7mg0qi07jniv8ywv-igv-2.4.15
/nix/store/8f51drx5yn8w869l7mg0qi07jniv8ywv-igv-2.4.15/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/n9hba031gjky8hpjgx9fnlaxhidyzxbz-bash-4.4-p23/bin/sh"
/nix/store/8f51drx5yn8w869l7mg0qi07jniv8ywv-igv-2.4.15/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/n9hba031gjky8hpjgx9fnlaxhidyzxbz-bash-4.4-p23/bin/sh"
/nix/store/8f51drx5yn8w869l7mg0qi07jniv8ywv-igv-2.4.15

@benley benley merged commit 37f01d5 into NixOS:master Nov 10, 2018
@r-ryantm r-ryantm deleted the auto-update/igv branch November 17, 2018 22:54
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@r-ryantm @GrahamcOfBorg @benley