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hdf5-threadsafe: 1.10.3 -> 1.10.4 #50100

Merged
merged 2 commits into from Nov 15, 2018
Merged

hdf5-threadsafe: 1.10.3 -> 1.10.4 #50100

merged 2 commits into from Nov 15, 2018

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r-ryantm
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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/hdf5-threadsafe/versions.

meta.description for hdf5-threadsafe is: '"Data model, library, and file format for storing and managing data"'.

Checks done (click to expand)
  • built on NixOS
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5diff passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5ls passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5dump passed the binary check.
  • Warning: no invocation of /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5debug had a zero exit code or showed the expected version
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5repart passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5mkgrp passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5clear passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5import passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5repack passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5jam passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5unjam passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5copy passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5format_convert passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5stat passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5perf_serial passed the binary check.
  • Warning: no invocation of /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5redeploy had a zero exit code or showed the expected version
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5cc passed the binary check.
  • 15 of 17 passed binary check by having a zero exit code.
  • 12 of 17 passed binary check by having the new version present in output.
  • found 1.10.4 with grep in /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4
  • directory tree listing: https://gist.github.com/d5ab83375e3c338c0fca5de0e2fc48cc
  • du listing: https://gist.github.com/4e53d320f8aca86f7b21b33ddc00309a
Outpath report (click to expand)

Outpath difference report
808 total rebuild paths

222 package rebuilds

221 x86_64-linux rebuilds
201 i686-linux rebuilds
176 x86_64-darwin rebuilds
210 aarch64-linux rebuilds

First ten rebuilds by attrpath
EBTKS
alembic
armadillo
bicgl
bicpl
caffe
caffe2
cdo
cntk
conglomerate

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A hdf5-threadsafe https://github.com/r-ryantm/nixpkgs/archive/4a1410e8a38dfbee8709dc938cc3f15ab367aa61.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4
ls -la /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin

@r-ryantm
hdf5-threadsafe: 1.10.3 -> 1.10.4
4a1410e 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/hdf5-threadsafe/versions
@GrahamcOfBorg
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Unexpected error: command failed with exit code 1 on x86_64-darwin (full log)

Attempted: hdf5-threadsafe

Partial log (click to expand)

cannot build derivation '/nix/store/g2m72k1b1ydj2psdvh9fb1qjl0qzd4ym-libssh2-1.8.0.drv': 2 dependencies couldn't be built
cannot build derivation '/nix/store/vw48bfni11di4b9z6c9w8sas3hjl5rd8-nghttp2-1.34.0.drv': 5 dependencies couldn't be built
cannot build derivation '/nix/store/givzp014g5pdngsz3d5jpxdlrfnmdcd2-curl-7.62.0.drv': 6 dependencies couldn't be built
output '/nix/store/f0ilrya5bvi8g8xhsk85317vy226y643-stdenv-darwin' is not allowed to refer to the following paths:
     /nix/store/2ws9cmamvr7xyvdg4d2nnd1bmr1zjrrq-bootstrap-tools
cannot build derivation '/nix/store/rr7blj1byprpbqs9p2yn8vblay301j10-mirrors-list.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/pcwf282y47nbd11hc2j5abwsn88i9lsm-remove-references-to.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/wipb34wh2z8gkgwgmclwr8s21r6q5chl-hdf5-1.10.4.tar.bz2.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/j72d1r276mcfadgvcmg3aapksycxplp7-hdf5-1.10.4.drv': 3 dependencies couldn't be built
error: build of '/nix/store/j72d1r276mcfadgvcmg3aapksycxplp7-hdf5-1.10.4.drv' failed

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: hdf5-threadsafe

Partial log (click to expand)

shrinking /nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4/bin/h5diff
shrinking /nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4/lib/libhdf5.so.103.0.0
strip is /nix/store/xzn29jrdk6czmx5qai15v6hwsrxviw4c-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4/lib  /nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4/bin
patching script interpreter paths in /nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4
/nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4/share/hdf5_examples/run-all-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/bz05mnzgipkkcvlr3l6avvh659ck7zrf-bash-4.4-p23/bin/sh"
/nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4/share/hdf5_examples/c/run-c-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/bz05mnzgipkkcvlr3l6avvh659ck7zrf-bash-4.4-p23/bin/sh"
/nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4/bin/h5redeploy: interpreter directive changed from " /bin/sh" to "/nix/store/bz05mnzgipkkcvlr3l6avvh659ck7zrf-bash-4.4-p23/bin/sh"
/nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4/bin/h5cc: interpreter directive changed from " /bin/sh" to "/nix/store/bz05mnzgipkkcvlr3l6avvh659ck7zrf-bash-4.4-p23/bin/sh"
checking for references to /build in /nix/store/s4g14z82v2zx0537js021pa2cxxz72g9-hdf5-1.10.4...

@GrahamcOfBorg
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Success on aarch64-linux (full log)

Attempted: hdf5-threadsafe

Partial log (click to expand)

shrinking /nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4/lib/libhdf5.so.103.0.0
strip is /nix/store/426i2d272x6c8j4shwl1377xj2cf1ijj-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4/lib  /nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4/bin
patching script interpreter paths in /nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4
/nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4/share/hdf5_examples/run-all-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/dsvsl7r2vqvjilphj8ci8skxkib89xsa-bash-4.4-p23/bin/sh"
/nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4/share/hdf5_examples/c/run-c-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/dsvsl7r2vqvjilphj8ci8skxkib89xsa-bash-4.4-p23/bin/sh"
/nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4/bin/h5redeploy: interpreter directive changed from " /bin/sh" to "/nix/store/dsvsl7r2vqvjilphj8ci8skxkib89xsa-bash-4.4-p23/bin/sh"
/nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4/bin/h5cc: interpreter directive changed from " /bin/sh" to "/nix/store/dsvsl7r2vqvjilphj8ci8skxkib89xsa-bash-4.4-p23/bin/sh"
checking for references to /build in /nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4...
/nix/store/3l8haqcnm1qdimwhhp8ymq6cdwhcjazm-hdf5-1.10.4

@c0bw3b
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c0bw3b commented Nov 15, 2018

@GrahamcOfBorg build alembic

@GrahamcOfBorg
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Success on aarch64-linux (full log)

Attempted: alembic

Partial log (click to expand)

shrinking RPATHs of ELF executables and libraries in /nix/store/k7hsycxmpdzkvmjng1mr2f2np45y64gz-alembic-1.7.9
strip is /nix/store/s2azzxwmnjql93c8xwrdhp48xrmki1yz-binutils-2.30/bin/strip
patching script interpreter paths in /nix/store/k7hsycxmpdzkvmjng1mr2f2np45y64gz-alembic-1.7.9
checking for references to /build in /nix/store/k7hsycxmpdzkvmjng1mr2f2np45y64gz-alembic-1.7.9...
shrinking RPATHs of ELF executables and libraries in /nix/store/qpia14mwil5s6mswm2yv3gbzib357k81-alembic-1.7.9-lib
shrinking /nix/store/qpia14mwil5s6mswm2yv3gbzib357k81-alembic-1.7.9-lib/lib/libAlembic.so.1.7.9
strip is /nix/store/s2azzxwmnjql93c8xwrdhp48xrmki1yz-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/qpia14mwil5s6mswm2yv3gbzib357k81-alembic-1.7.9-lib/lib
patching script interpreter paths in /nix/store/qpia14mwil5s6mswm2yv3gbzib357k81-alembic-1.7.9-lib
checking for references to /build in /nix/store/qpia14mwil5s6mswm2yv3gbzib357k81-alembic-1.7.9-lib...

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: alembic

Partial log (click to expand)

shrinking RPATHs of ELF executables and libraries in /nix/store/5kf13l6s8l5rmwb41llzwnnpv5il7h87-alembic-1.7.9
strip is /nix/store/cr415sky7bmrpyp63adqhaaslj83b15w-binutils-2.30/bin/strip
patching script interpreter paths in /nix/store/5kf13l6s8l5rmwb41llzwnnpv5il7h87-alembic-1.7.9
checking for references to /build in /nix/store/5kf13l6s8l5rmwb41llzwnnpv5il7h87-alembic-1.7.9...
shrinking RPATHs of ELF executables and libraries in /nix/store/dib47ybjm7fhaalpgqpp009axjmgsilm-alembic-1.7.9-lib
shrinking /nix/store/dib47ybjm7fhaalpgqpp009axjmgsilm-alembic-1.7.9-lib/lib/libAlembic.so.1.7.9
strip is /nix/store/cr415sky7bmrpyp63adqhaaslj83b15w-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/dib47ybjm7fhaalpgqpp009axjmgsilm-alembic-1.7.9-lib/lib
patching script interpreter paths in /nix/store/dib47ybjm7fhaalpgqpp009axjmgsilm-alembic-1.7.9-lib
checking for references to /build in /nix/store/dib47ybjm7fhaalpgqpp009axjmgsilm-alembic-1.7.9-lib...

@c0bw3b
hdf5: update meta.license
1918dc8 
HDF5 is licensed under a BSD 3-clause variant
@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: hdf5, hdf5-threadsafe

Partial log (click to expand)

shrinking /nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4/bin/h5diff
shrinking /nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4/lib/libhdf5.so.103.0.0
strip is /nix/store/cr415sky7bmrpyp63adqhaaslj83b15w-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4/lib  /nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4/bin
patching script interpreter paths in /nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4
/nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4/share/hdf5_examples/run-all-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/9nyxsx4mj2yv81br7dyi4a9y2k7q7y3q-bash-4.4-p23/bin/sh"
/nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4/share/hdf5_examples/c/run-c-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/9nyxsx4mj2yv81br7dyi4a9y2k7q7y3q-bash-4.4-p23/bin/sh"
/nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4/bin/h5redeploy: interpreter directive changed from " /bin/sh" to "/nix/store/9nyxsx4mj2yv81br7dyi4a9y2k7q7y3q-bash-4.4-p23/bin/sh"
/nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4/bin/h5cc: interpreter directive changed from " /bin/sh" to "/nix/store/9nyxsx4mj2yv81br7dyi4a9y2k7q7y3q-bash-4.4-p23/bin/sh"
checking for references to /build in /nix/store/w2ba2lq2g7h31xcbb2qss5dwliqbvx9f-hdf5-1.10.4...

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Success on aarch64-linux (full log)

Attempted: hdf5, hdf5-threadsafe

Partial log (click to expand)

patching script interpreter paths in /nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4
/nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4/share/hdf5_examples/run-all-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/ld63nn7dfm03ky5sklsndh9cggi97q7a-bash-4.4-p23/bin/sh"
/nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4/share/hdf5_examples/hl/run-hl-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/ld63nn7dfm03ky5sklsndh9cggi97q7a-bash-4.4-p23/bin/sh"
/nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4/share/hdf5_examples/hl/c/run-hlc-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/ld63nn7dfm03ky5sklsndh9cggi97q7a-bash-4.4-p23/bin/sh"
/nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4/share/hdf5_examples/c/run-c-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/ld63nn7dfm03ky5sklsndh9cggi97q7a-bash-4.4-p23/bin/sh"
/nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4/bin/h5redeploy: interpreter directive changed from " /bin/sh" to "/nix/store/ld63nn7dfm03ky5sklsndh9cggi97q7a-bash-4.4-p23/bin/sh"
/nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4/bin/h5cc: interpreter directive changed from " /bin/sh" to "/nix/store/ld63nn7dfm03ky5sklsndh9cggi97q7a-bash-4.4-p23/bin/sh"
checking for references to /build in /nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4...
/nix/store/sb7vk5knwd2izby7cnynvxdhvv9g0caq-hdf5-1.10.4
/nix/store/smhd0pja5k56xcv2ja1hnbxz8y0isn79-hdf5-1.10.4

@c0bw3b c0bw3b merged commit 8684ef1 into NixOS:staging Nov 15, 2018
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Timed out, unknown build status on x86_64-darwin (full log)

Attempted: hdf5, hdf5-threadsafe

Partial log (click to expand)

cannot build derivation '/nix/store/zy6cr1s79c03k8g7z8rnjix2yhh6jaik-perl-5.28.0.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/5h04709n7cqy7m035jsx7hnqgn8c0qjv-pkg-config-0.29.2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/kf46rb164h8rjkya5w96ccqcscrjajly-openssl-1.0.2p.drv': 2 dependencies couldn't be built
cannot build derivation '/nix/store/j8fnp7ipnr3b0076nm341fasqx5kjpfj-libssh2-1.8.0.drv': 2 dependencies couldn't be built
cannot build derivation '/nix/store/fl3plpjk2gqr2rms0wa8jaqw881sjqzr-nghttp2-1.34.0.drv': 5 dependencies couldn't be built
cannot build derivation '/nix/store/kimjp9mz015k2aw4cinz16dqsj8cakv2-curl-7.62.0.drv': 6 dependencies couldn't be built
cannot build derivation '/nix/store/q2f5in6k6qrzzyifiywa758zlgg28q7l-hdf5-1.10.4.tar.bz2.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/vya6qisv4as7x5alxvdmzwk69ybfay1n-hdf5-1.10.4.drv': 4 dependencies couldn't be built
cannot build derivation '/nix/store/ycqzv75zj40kf47a909wsbipr50429ym-hdf5-1.10.4.drv': 4 dependencies couldn't be built
error: build of '/nix/store/vya6qisv4as7x5alxvdmzwk69ybfay1n-hdf5-1.10.4.drv', '/nix/store/ycqzv75zj40kf47a909wsbipr50429ym-hdf5-1.10.4.drv' failed

@r-ryantm r-ryantm deleted the auto-update/hdf5-threadsafe branch November 17, 2018 22:53
@c0bw3b c0bw3b mentioned this pull request Nov 19, 2018
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