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gromacs: 2018.3 -> 2018.4 #50734

Merged
merged 1 commit into from Nov 20, 2018
Merged

gromacs: 2018.3 -> 2018.4 #50734

merged 1 commit into from Nov 20, 2018

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r-ryantm
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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gromacs/versions.

meta.description for gromacs is: '"Molecular dynamics software package"'.

Checks done (click to expand)
  • built on NixOS
  • Warning: no invocation of /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/GMXRC had a zero exit code or showed the expected version
  • /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/GMXRC.bash passed the binary check.
  • /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/GMXRC.zsh passed the binary check.
  • Warning: no invocation of /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/GMXRC.csh had a zero exit code or showed the expected version
  • Warning: no invocation of /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/demux.pl had a zero exit code or showed the expected version
  • Warning: no invocation of /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/xplor2gmx.pl had a zero exit code or showed the expected version
  • Warning: no invocation of /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/gmx-completion.bash had a zero exit code or showed the expected version
  • Warning: no invocation of /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/gmx-completion-gmx.bash had a zero exit code or showed the expected version
  • /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/gmx passed the binary check.
  • 3 of 9 passed binary check by having a zero exit code.
  • 0 of 9 passed binary check by having the new version present in output.
  • found 2018.4 with grep in /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4
  • directory tree listing: https://gist.github.com/bc5feabb1cbac3b92a45a1f6590bf17e
  • du listing: https://gist.github.com/3df639bf4b79509e88645fc6b22f4d5a
Rebuild report (click to expand)

16 total rebuild path(s)

4 package rebuild(s)

4 x86_64-linux rebuild(s)
4 i686-linux rebuild(s)
4 x86_64-darwin rebuild(s)
4 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
gromacs
gromacsDouble
gromacsDoubleMpi
gromacsMpi

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A gromacs https://github.com/r-ryantm/nixpkgs/archive/08a01923401bc9103742a8ef9351e14a495dcf4b.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4
ls -la /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin

@r-ryantm
gromacs: 2018.3 -> 2018.4
08a0192 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
@GrahamcOfBorg
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Success on aarch64-linux (full log)

Attempted: gromacs

Partial log (click to expand)

-- Installing: /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4/bin/gmx-completion-gmx.bash
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4
shrinking /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4/lib/libgromacs.so.3.4.0
shrinking /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4/bin/gmx
gzipping man pages under /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4/share/man/
strip is /nix/store/p9akxn2sfy4wkhqdqa3li97pc6jaz3r1-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4/lib  /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4/bin
patching script interpreter paths in /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4
checking for references to /build in /nix/store/xjyfsi73f8wxgy881q8i4sic0355bxzb-gromacs-2018.4...

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: gromacs

Partial log (click to expand)

-- Installing: /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/gmx-completion-gmx.bash
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4
shrinking /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin/gmx
shrinking /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/lib/libgromacs.so.3.4.0
gzipping man pages under /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/share/man/
strip is /nix/store/vcc4svb8gy29g4pam2zja6llkbcwsyiq-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/lib  /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4/bin
patching script interpreter paths in /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4
checking for references to /build in /nix/store/2c78mrfnmf8hfl81mwdwmqp759d640l3-gromacs-2018.4...

@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: gromacs

Partial log (click to expand)

-- Installing: /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4/include/gromacs/trajectoryanalysis/cmdlinerunner.h
-- Installing: /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4/bin/gmx
-- Up-to-date: /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4/bin
-- Installing: /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4/bin/gmx-completion.bash
-- Installing: /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4/bin/gmx-completion-gmx.bash
post-installation fixup
gzipping man pages under /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4/share/man/
strip is /nix/store/g5r4apl0za012ffs6ladinwa5w0m1l3k-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4/lib  /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4/bin
patching script interpreter paths in /nix/store/17k3h91fsjm5g0xp8w7a6cqczcgp504v-gromacs-2018.4

@markuskowa markuskowa merged commit 0e98312 into NixOS:master Nov 20, 2018
@r-ryantm r-ryantm deleted the auto-update/gromacs branch December 8, 2018 22:23
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