Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

hdf5-threadsafe: 1.10.3 -> 1.10.4 #50738

Closed
wants to merge 1 commit into from
Closed

hdf5-threadsafe: 1.10.3 -> 1.10.4 #50738

wants to merge 1 commit into from

Conversation

r-ryantm
Copy link
Contributor

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/hdf5-threadsafe/versions.

meta.description for hdf5-threadsafe is: '"Data model, library, and file format for storing and managing data"'.

Checks done (click to expand)
  • built on NixOS
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5diff passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5ls passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5dump passed the binary check.
  • Warning: no invocation of /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5debug had a zero exit code or showed the expected version
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5repart passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5mkgrp passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5clear passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5import passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5repack passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5jam passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5unjam passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5copy passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5format_convert passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5stat passed the binary check.
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5perf_serial passed the binary check.
  • Warning: no invocation of /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5redeploy had a zero exit code or showed the expected version
  • /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin/h5cc passed the binary check.
  • 15 of 17 passed binary check by having a zero exit code.
  • 12 of 17 passed binary check by having the new version present in output.
  • found 1.10.4 with grep in /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4
  • directory tree listing: https://gist.github.com/c068e52b5560aeff117ef3b8c0bea12f
  • du listing: https://gist.github.com/ac2bf885adef11f6a66c2b4b32d2771d
Rebuild report (click to expand)

815 total rebuild path(s)

223 package rebuild(s)

222 x86_64-linux rebuild(s)
205 i686-linux rebuild(s)
176 x86_64-darwin rebuild(s)
212 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
EBTKS
alembic
armadillo
bicgl
bicpl
caffe
caffe2
cdo
cntk
conglomerate
digikam
eccodes
enblend-enfuse
ezminc
fast-neural-doodle
fenics
freecad
gazebo
gazebo-headless
gazeboSimulator.gazebo6
gazeboSimulator.gazebo6-headless
gazeboSimulator.gazebo7
gazeboSimulator.gazebo7-headless
gdal
gnss-sdr
grass
grib-api
h5utils
haskellPackages.hdf5-lite
hdf5
hdf5-cpp
hdf5-fortran
hdf5-mpi
hdf5-threadsafe
hugin
inormalize
kallisto
kdeApplications.kdenlive
kdenlive
kst
libLAS
libminc
libreoffice
libreoffice-fresh
libreoffice-fresh-unwrapped
libreoffice-still
libreoffice-still-unwrapped
libreoffice-unwrapped
libsForQt5.mlt
libsForQt511.mlt

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A hdf5-threadsafe https://github.com/r-ryantm/nixpkgs/archive/250c35002108da2715c005264f839397d9bc51c9.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4
ls -la /nix/store/g6mcnn0j5z38lvwdkk9zcm17q683ilyd-hdf5-1.10.4/bin

@r-ryantm
hdf5-threadsafe: 1.10.3 -> 1.10.4
250c350 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/hdf5-threadsafe/versions
@GrahamcOfBorg
Copy link

Success on x86_64-linux (full log)

Attempted: hdf5-threadsafe

Partial log (click to expand)

these paths will be fetched (1.52 MiB download, 7.01 MiB unpacked):
  /nix/store/6kivpfgkd7nnl176a99wc3hq8kzxrwkw-hdf5-1.10.4
copying path '/nix/store/6kivpfgkd7nnl176a99wc3hq8kzxrwkw-hdf5-1.10.4' from 'https://nix-cache.s3.amazonaws.com'...
/nix/store/6kivpfgkd7nnl176a99wc3hq8kzxrwkw-hdf5-1.10.4

@GrahamcOfBorg
Copy link

Success on aarch64-linux (full log)

Attempted: hdf5-threadsafe

Partial log (click to expand)

shrinking /nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4/lib/libhdf5.so.103.0.0
strip is /nix/store/1jprj383qnzd50vn8qq3a0id6a08a9fi-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4/lib  /nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4/bin
patching script interpreter paths in /nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4
/nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4/share/hdf5_examples/run-all-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/vg9477j4nafj505cr9agvgndxys7743x-bash-4.4-p23/bin/sh"
/nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4/share/hdf5_examples/c/run-c-ex.sh: interpreter directive changed from " /bin/sh" to "/nix/store/vg9477j4nafj505cr9agvgndxys7743x-bash-4.4-p23/bin/sh"
/nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4/bin/h5redeploy: interpreter directive changed from " /bin/sh" to "/nix/store/vg9477j4nafj505cr9agvgndxys7743x-bash-4.4-p23/bin/sh"
/nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4/bin/h5cc: interpreter directive changed from " /bin/sh" to "/nix/store/vg9477j4nafj505cr9agvgndxys7743x-bash-4.4-p23/bin/sh"
checking for references to /build/ in /nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4...
/nix/store/bl9df00nnd3c6aw37gabzbs1dxfybj4r-hdf5-1.10.4

@GrahamcOfBorg
Copy link

Timed out, unknown build status on x86_64-darwin (full log)

Attempted: hdf5-threadsafe

Partial log (click to expand)

cannot build derivation '/nix/store/9wz7d7nxi2yhvi5dhq0nzgwlsc0c14vn-clang-5.0.2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/372n5gnp6088yk92cikmdnsrqh6gb1zq-compiler-rt-5.0.2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/pna9s3cspkkx7qfbwl09dblwjgwn08hq-cctools-binutils-darwin.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/5rzbmkg7za1rqbcv7blhjj0gqjwklcdh-cctools-binutils-darwin-wrapper.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/w2j5zljrlpj07cgc4hq5xw0kl97b9hp4-clang-wrapper-5.0.2.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/0fyjbzdcda241j1ibh68gv5f25rslyrb-stdenv-darwin.drv': 6 dependencies couldn't be built
cannot build derivation '/nix/store/10i596kkwacnza4fh2vqc5r0gmzx18wj-remove-references-to.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/9y8c66lbibw5hic2bnc7pzpgkvc5pwwk-stdenv-darwin.drv': 7 dependencies couldn't be built
cannot build derivation '/nix/store/kaac8jhadwb48mr3czj479vbk2yv59mi-hdf5-1.10.4.drv': 3 dependencies couldn't be built
error: build of '/nix/store/kaac8jhadwb48mr3czj479vbk2yv59mi-hdf5-1.10.4.drv' failed

@c0bw3b
Copy link
Contributor

c0bw3b commented Nov 19, 2018

But this is already in staging --> #50100

@ryantm

@c0bw3b c0bw3b closed this Nov 19, 2018
@ryantm ryantm mentioned this pull request Nov 19, 2018
Closed
@r-ryantm r-ryantm deleted the auto-update/hdf5-threadsafe branch December 8, 2018 22:23
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
10.rebuild-darwin: 0 10.rebuild-linux: 0
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
3 participants
@r-ryantm @GrahamcOfBorg @c0bw3b