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base repository: NixOS/nixpkgs
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  • 2 commits
  • 1 file changed
  • 2 contributors

Commits on Aug 31, 2019

  1. kallisto: 0.43.1 -> 0.46.0

    @tadeokondrak
    tadeokondrak committed Aug 31, 2019
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    2aa9b65 View commit details

Commits on Sep 1, 2019

  1. Merge pull request #64289 from tadeokondrak/kallisto/update/0.46.0 

    kallisto: 0.43.1 -> 0.46.0
    @worldofpeace
    worldofpeace authored Sep 1, 2019
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    732c0a0 View commit details
Showing with 11 additions and 8 deletions.
  1. +11 −8 pkgs/applications/science/biology/kallisto/default.nix
19 changes: 11 additions & 8 deletions pkgs/applications/science/biology/kallisto/default.nix
View file
Original file line number Diff line number Diff line change
@@ -1,25 +1,28 @@
{ stdenv, fetchFromGitHub, cmake, hdf5, zlib }:
{ stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:

stdenv.mkDerivation rec {
pname = "kallisto";
version = "0.43.1";
version = "0.46.0";

src = fetchFromGitHub {
repo = "kallisto";
owner = "pachterlab";
rev = "v${version}";
sha256 = "04697pf7jvy7vw126s1rn09q4iab9223jvb1nb0jn7ilwkq7pgwz";
sha256 = "09vgdqwpigl4x3sdw5vjfyknsllkli339mh8xapbf7ldm0jldfn9";
};

nativeBuildInputs = [ cmake ];
nativeBuildInputs = [ autoconf cmake ];

buildInputs = [ hdf5 zlib ];

# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
enableParallelBuilding = false;

meta = with stdenv.lib; {
description = "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data";
homepage = https://pachterlab.github.io/kallisto;
description = "Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data";
homepage = "https://pachterlab.github.io/kallisto";
license = licenses.bsd2;
platforms = platforms.linux;
maintainers = [ maintainers.arcadio ];
maintainers = with maintainers; [ arcadio ];
};
}