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Update CRAN and Bioconductor package sets #57423

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Update CRAN and Bioconductor package sets #57423

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jabranham
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Motivation for this change

Update CRAN and bioconductor package sets. Would be nice to merge around the same time as the R version bump (#57400) so that existing installed packages don't have to get recompiled twice.

Things done

Ran nix-build test-evaluation.nix --dry-run.

  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Assured whether relevant documentation is up to date
  • Fits CONTRIBUTING.md.

@jabranham jabranham requested a review from peti as a code owner March 11, 2019 17:49
@peti
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peti commented Mar 13, 2019

Merged to r-updates in 418f176495457797fdd4dc159382e32a035ed33d. Test builds will take place at https://hydra.nixos.org/jobset/nixpkgs/r-updates.

@peti peti self-assigned this Mar 13, 2019
@jabranham
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@peti Looks like this and #57400 have finished on hydra.

@peti peti closed this in 8dcba2b Mar 14, 2019
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@peti peti Awaiting requested review from peti

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@peti peti

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10.rebuild-darwin: 1-10 10.rebuild-linux: 1-10
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@jabranham @peti @GrahamcOfBorg