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igv: 2.4.10 -> 2.4.11 #43003

Merged
merged 1 commit into from Jul 9, 2018
Merged

igv: 2.4.10 -> 2.4.11 #43003

merged 1 commit into from Jul 9, 2018

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r-ryantm
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@r-ryantm r-ryantm commented Jul 4, 2018

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/igv/versions.

These checks were done:

meta.description for igv is: '"A visualization tool for interactive exploration of genomic datasets"'.

cc @mimadrid for testing.

This build is cached with Cachix. To use the cache follow these instructions:

One time setup in nixpkgs Git checkout:

cachix use r-ryantm
git remote add r-ryantm https://github.com/r-ryantm/nixpkgs.git

Test this build:

git fetch r-ryantm && git checkout 147bb48d24876f642d1e4024c252196286651796 && nix-shell --pure -I nixpkgs=. -p igv

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/igv/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/bin/igv had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.4.11 with grep in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11
- directory tree listing: https://gist.github.com/ca4cf484aab1c1590806c47c4fdde1d7
- du listing: https://gist.github.com/f7ff80a2429cf0a942195db4944659b1
@GrahamcOfBorg
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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: igv

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.


@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: igv

Partial log (click to expand)

'igv.command' -> '/nix/store/dq8y684fjzpa028aviwx5ivz432zh1gb-igv-2.4.11/share/igv.command'
'igv.jar' -> '/nix/store/dq8y684fjzpa028aviwx5ivz432zh1gb-igv-2.4.11/share/igv.jar'
'igv.sh' -> '/nix/store/dq8y684fjzpa028aviwx5ivz432zh1gb-igv-2.4.11/share/igv.sh'
post-installation fixup
strip is /nix/store/7ddbq63v97nk8gkbf7gcsfmby37h6gbl-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/dq8y684fjzpa028aviwx5ivz432zh1gb-igv-2.4.11/bin
patching script interpreter paths in /nix/store/dq8y684fjzpa028aviwx5ivz432zh1gb-igv-2.4.11
/nix/store/dq8y684fjzpa028aviwx5ivz432zh1gb-igv-2.4.11/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/q2wqq1k20v8kc3vckapqf5nws30brnni-bash-4.4-p23/bin/sh"
/nix/store/dq8y684fjzpa028aviwx5ivz432zh1gb-igv-2.4.11/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/q2wqq1k20v8kc3vckapqf5nws30brnni-bash-4.4-p23/bin/sh"
/nix/store/dq8y684fjzpa028aviwx5ivz432zh1gb-igv-2.4.11

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: igv

Partial log (click to expand)

'igv.sh' -> '/nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/share/igv.sh'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11
strip is /nix/store/4qvrxzxa535y8304mk195x50b6p9607d-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/bin
patching script interpreter paths in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11
/nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/8zkg9ac4s4alzyf4a8kfrig1j73z66dw-bash-4.4-p23/bin/sh"
/nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/8zkg9ac4s4alzyf4a8kfrig1j73z66dw-bash-4.4-p23/bin/sh"
checking for references to /build in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11...
/nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11

@xeji xeji merged commit 6ec4be7 into NixOS:master Jul 9, 2018
@r-ryantm r-ryantm deleted the auto-update/igv branch July 9, 2018 14:17
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3 participants