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igv: 2.4.11 -> 2.4.13 #43471

Merged
merged 1 commit into from Jul 13, 2018
Merged

igv: 2.4.11 -> 2.4.13 #43471

merged 1 commit into from Jul 13, 2018

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r-ryantm
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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/igv/versions.

meta.description for igv is: '"A visualization tool for interactive exploration of genomic datasets"'.

Checks done (click to expand)
Test this build with Cachix (click to expand)

One time setup in nixpkgs Git checkout:

cachix use r-ryantm
git remote add r-ryantm https://github.com/r-ryantm/nixpkgs.git

Test this build:

git fetch r-ryantm && git checkout ab535c2757b381c9c6d42572015aa516af3b0521 && nix-shell --pure -I nixpkgs=. -p igv

cc @mimadrid for testing.

igv: 2.4.11 -> 2.4.13
ab535c2 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/igv/versions.
@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: igv

Partial log (click to expand)

'log4j-core-2.11.0.jar' -> '/nix/store/xd5c6mib8a2qrfskmhrz7nn62zf763kr-igv-2.4.13/share/log4j-core-2.11.0.jar'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/xd5c6mib8a2qrfskmhrz7nn62zf763kr-igv-2.4.13
strip is /nix/store/4qvrxzxa535y8304mk195x50b6p9607d-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/xd5c6mib8a2qrfskmhrz7nn62zf763kr-igv-2.4.13/bin
patching script interpreter paths in /nix/store/xd5c6mib8a2qrfskmhrz7nn62zf763kr-igv-2.4.13
/nix/store/xd5c6mib8a2qrfskmhrz7nn62zf763kr-igv-2.4.13/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/8zkg9ac4s4alzyf4a8kfrig1j73z66dw-bash-4.4-p23/bin/sh"
/nix/store/xd5c6mib8a2qrfskmhrz7nn62zf763kr-igv-2.4.13/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/8zkg9ac4s4alzyf4a8kfrig1j73z66dw-bash-4.4-p23/bin/sh"
checking for references to /build in /nix/store/xd5c6mib8a2qrfskmhrz7nn62zf763kr-igv-2.4.13...
/nix/store/xd5c6mib8a2qrfskmhrz7nn62zf763kr-igv-2.4.13

@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: igv

Partial log (click to expand)

'igv.jar' -> '/nix/store/92xx6sw326y5rfv4scql4kcprgyvpm5b-igv-2.4.13/share/igv.jar'
'igv.sh' -> '/nix/store/92xx6sw326y5rfv4scql4kcprgyvpm5b-igv-2.4.13/share/igv.sh'
'log4j-core-2.11.0.jar' -> '/nix/store/92xx6sw326y5rfv4scql4kcprgyvpm5b-igv-2.4.13/share/log4j-core-2.11.0.jar'
post-installation fixup
strip is /nix/store/7ddbq63v97nk8gkbf7gcsfmby37h6gbl-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/92xx6sw326y5rfv4scql4kcprgyvpm5b-igv-2.4.13/bin
patching script interpreter paths in /nix/store/92xx6sw326y5rfv4scql4kcprgyvpm5b-igv-2.4.13
/nix/store/92xx6sw326y5rfv4scql4kcprgyvpm5b-igv-2.4.13/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/q2wqq1k20v8kc3vckapqf5nws30brnni-bash-4.4-p23/bin/sh"
/nix/store/92xx6sw326y5rfv4scql4kcprgyvpm5b-igv-2.4.13/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/q2wqq1k20v8kc3vckapqf5nws30brnni-bash-4.4-p23/bin/sh"
/nix/store/92xx6sw326y5rfv4scql4kcprgyvpm5b-igv-2.4.13

@GrahamcOfBorg
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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: igv

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.

@FRidh FRidh merged commit 59163c9 into NixOS:master Jul 13, 2018
@r-ryantm r-ryantm deleted the auto-update/igv branch July 13, 2018 17:12
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@r-ryantm @GrahamcOfBorg @FRidh