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igv: 2.4.13 -> 2.4.14 #45217

Merged
merged 1 commit into from Aug 17, 2018
Merged

igv: 2.4.13 -> 2.4.14 #45217

merged 1 commit into from Aug 17, 2018

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r-ryantm
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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/igv/versions.

meta.description for igv is: '"A visualization tool for interactive exploration of genomic datasets"'.

Checks done (click to expand)
Test this build with Cachix (click to expand)

One time setup in nixpkgs Git checkout:

cachix use r-ryantm
git remote add r-ryantm https://github.com/r-ryantm/nixpkgs.git

Test this build:

git fetch r-ryantm && git checkout 33ebfbfcf870ac115f034b0799243058c5bb9d6c && nix-shell --pure -I nixpkgs=. -p igv

cc @mimadrid for testing.

igv: 2.4.13 -> 2.4.14
33ebfbf 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions.
@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: igv

Partial log (click to expand)

'readme.txt' -> '/nix/store/4wvhmxia7xv6dgs1zslfdi4carpms9z4-igv-2.4.14/share/readme.txt'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/4wvhmxia7xv6dgs1zslfdi4carpms9z4-igv-2.4.14
strip is /nix/store/gpc2wld1s0c6qzx9326cwn1wcx29xzsj-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/4wvhmxia7xv6dgs1zslfdi4carpms9z4-igv-2.4.14/bin
patching script interpreter paths in /nix/store/4wvhmxia7xv6dgs1zslfdi4carpms9z4-igv-2.4.14
/nix/store/4wvhmxia7xv6dgs1zslfdi4carpms9z4-igv-2.4.14/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/56nrxy58wbhvs2sy3rir1jqa68p0kkm5-bash-4.4-p23/bin/sh"
/nix/store/4wvhmxia7xv6dgs1zslfdi4carpms9z4-igv-2.4.14/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/56nrxy58wbhvs2sy3rir1jqa68p0kkm5-bash-4.4-p23/bin/sh"
checking for references to /build in /nix/store/4wvhmxia7xv6dgs1zslfdi4carpms9z4-igv-2.4.14...
/nix/store/4wvhmxia7xv6dgs1zslfdi4carpms9z4-igv-2.4.14

@GrahamcOfBorg
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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: igv

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.

@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: igv

Partial log (click to expand)

'lib/batik-codec-1.10.jar' -> '/nix/store/2xs3xvsn6x4j2965arpwz96m1vllgg76-igv-2.4.14/share/lib/batik-codec-1.10.jar'
'lib/log4j-core-2.11.0.jar' -> '/nix/store/2xs3xvsn6x4j2965arpwz96m1vllgg76-igv-2.4.14/share/lib/log4j-core-2.11.0.jar'
'readme.txt' -> '/nix/store/2xs3xvsn6x4j2965arpwz96m1vllgg76-igv-2.4.14/share/readme.txt'
post-installation fixup
strip is /nix/store/251fvx4mx9q4zarbca5cciasmn66p668-cctools-binutils-darwin/bin/strip
stripping (with command strip and flags -S) in /nix/store/2xs3xvsn6x4j2965arpwz96m1vllgg76-igv-2.4.14/bin
patching script interpreter paths in /nix/store/2xs3xvsn6x4j2965arpwz96m1vllgg76-igv-2.4.14
/nix/store/2xs3xvsn6x4j2965arpwz96m1vllgg76-igv-2.4.14/share/igv.command: interpreter directive changed from "/bin/sh" to "/nix/store/hp9yq2m1i066irvasv20zr2lmj54fk9h-bash-4.4-p23/bin/sh"
/nix/store/2xs3xvsn6x4j2965arpwz96m1vllgg76-igv-2.4.14/share/igv.sh: interpreter directive changed from "/bin/sh" to "/nix/store/hp9yq2m1i066irvasv20zr2lmj54fk9h-bash-4.4-p23/bin/sh"
/nix/store/2xs3xvsn6x4j2965arpwz96m1vllgg76-igv-2.4.14

@Mic92 Mic92 merged commit 0359c5e into NixOS:master Aug 17, 2018
@r-ryantm r-ryantm deleted the auto-update/igv branch August 18, 2018 03:43
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@r-ryantm @GrahamcOfBorg @Mic92