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picard-tools: 2.18.10 -> 2.18.11 #45158

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merged 1 commit into from Aug 16, 2018
Merged

picard-tools: 2.18.10 -> 2.18.11 #45158

merged 1 commit into from Aug 16, 2018

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r-ryantm
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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

meta.description for picard-tools is: '"Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF."'.

Checks done (click to expand)
Test this build with Cachix (click to expand)

One time setup in nixpkgs Git checkout:

cachix use r-ryantm
git remote add r-ryantm https://github.com/r-ryantm/nixpkgs.git

Test this build:

git fetch r-ryantm && git checkout ff7d82d405f1772ec7930d443f26a37002264e11 && nix-shell --pure -I nixpkgs=. -p picard-tools

cc @jbedo for testing.

picard-tools: 2.18.10 -> 2.18.11
ff7d82d 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions.
@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: picard-tools

Partial log (click to expand)

building '/nix/store/ph4yz6shj5fzxin7b9b01sdic2d1cw9x-picard.jar.drv'...

trying https://github.com/broadinstitute/picard/releases/download/2.18.11/picard.jar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   600    0   600    0     0   1591      0 --:--:-- --:--:-- --:--:--  1587
100 14.7M  100 14.7M    0     0  4731k      0  0:00:03  0:00:03 --:--:-- 7503k
building '/nix/store/rb1pqfj6p22dhbrn7sxpi4r1gmmg7qag-picard-tools-2.18.11.drv'...
installing
/nix/store/aj52xk7s7il524dlk14731a801yjmcf6-picard-tools-2.18.11

@GrahamcOfBorg
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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: picard-tools

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.

@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: picard-tools

Partial log (click to expand)

building '/nix/store/26hgkij85i17s1g42dlwil80qnmz1xaz-picard.jar.drv'...

trying https://github.com/broadinstitute/picard/releases/download/2.18.11/picard.jar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   600    0   600    0     0   1006      0 --:--:-- --:--:-- --:--:--  1005
100 14.7M  100 14.7M    0     0  2725k      0  0:00:05  0:00:05 --:--:-- 3488k
building '/nix/store/zicpl4rab3c5k18ja3cndnq1apvpv3q2-picard-tools-2.18.11.drv'...
installing
/nix/store/d0y8awq43i0rdk9j4pg856ic4p6mgl6w-picard-tools-2.18.11

@Mic92 Mic92 merged commit 4e9b4a9 into NixOS:master Aug 16, 2018
@r-ryantm r-ryantm deleted the auto-update/picard-tools branch August 16, 2018 23:28
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@r-ryantm @GrahamcOfBorg @Mic92