openblas: backport fix #43234

timokau · 2018-07-08T22:05:56Z

Motivation for this change

OpenMathLib/OpenBLAS#1666

Causing test failures in cvxopt and (according to an openblas issue) numpy.

Also see cvxopt/cvxopt#122.

@ttuegel

Things done

Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS)
Built on platform(s)
- NixOS
- macOS
- other Linux distributions
Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
Tested execution of all binary files (usually in ./result/bin/)
Determined the impact on package closure size (by running nix path-info -S before and after)
Fits CONTRIBUTING.md.

GrahamcOfBorg · 2018-07-08T23:16:16Z

Failure on x86_64-linux (full log)

Attempted: openblas

Partial log (click to expand)

/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/xg++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/ -B/nix/store/wamwzihkc4l9vqqbdyqsbw5qzmndhbnh-gfortran-7.3.0/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/tmp/nix-build-gfortran-7.3.0.drv-0/gcc-7.3.0/libstdc++-v3/libsupc++ -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -fno-PIE -c   -O2 -I/nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -B/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib/ -idirafter /nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -idirafter /nix/store/bkl2zbbvhq8ykn7536gi5y17q2sb0wnd-gcc-7.3.0/lib/gcc/x86_64-unknown-linux-gnu/7.3.0/include-fixed -Wl,-rpath,/nix/store/bk73f2l94ad6n8sf2l1hjhziimn7si79-gfortran-7.3.0-lib/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-rpath -Wl,/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -gtoggle -DIN_GCC     -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc-7.3.0/gcc -I../../gcc-7.3.0/gcc/. -I../../gcc-7.3.0/gcc/../include -I../../gcc-7.3.0/gcc/../libcpp/include -I/nix/store/15c2af1gzqi9d0hpy0dh7b6glrx93hjj-gmp-6.1.2-dev/include -I/nix/store/b87qsjyrrn2s8bvabxrlmxrqpla79q52-mpfr-4.0.1-dev/include -I/nix/store/0faq00yqqyjlxy40a9nrjh94qhbj1zj9-libmpc-1.1.0/include  -I../../gcc-7.3.0/gcc/../libdecnumber -I../../gcc-7.3.0/gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc-7.3.0/gcc/../libbacktrace -I/nix/store/p2na74w3finvidh6agvnzwd3hs26lcsy-isl-0.17.1/include  -o final.o -MT final.o -MMD -MP -MF ./.deps/final.TPo ../../gcc-7.3.0/gcc/final.c
/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/xg++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/ -B/nix/store/wamwzihkc4l9vqqbdyqsbw5qzmndhbnh-gfortran-7.3.0/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/tmp/nix-build-gfortran-7.3.0.drv-0/gcc-7.3.0/libstdc++-v3/libsupc++ -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -fno-PIE -c   -O2 -I/nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -B/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib/ -idirafter /nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -idirafter /nix/store/bkl2zbbvhq8ykn7536gi5y17q2sb0wnd-gcc-7.3.0/lib/gcc/x86_64-unknown-linux-gnu/7.3.0/include-fixed -Wl,-rpath,/nix/store/bk73f2l94ad6n8sf2l1hjhziimn7si79-gfortran-7.3.0-lib/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-rpath -Wl,/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -gtoggle -DIN_GCC     -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc-7.3.0/gcc -I../../gcc-7.3.0/gcc/. -I../../gcc-7.3.0/gcc/../include -I../../gcc-7.3.0/gcc/../libcpp/include -I/nix/store/15c2af1gzqi9d0hpy0dh7b6glrx93hjj-gmp-6.1.2-dev/include -I/nix/store/b87qsjyrrn2s8bvabxrlmxrqpla79q52-mpfr-4.0.1-dev/include -I/nix/store/0faq00yqqyjlxy40a9nrjh94qhbj1zj9-libmpc-1.1.0/include  -I../../gcc-7.3.0/gcc/../libdecnumber -I../../gcc-7.3.0/gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc-7.3.0/gcc/../libbacktrace -I/nix/store/p2na74w3finvidh6agvnzwd3hs26lcsy-isl-0.17.1/include  -o fixed-value.o -MT fixed-value.o -MMD -MP -MF ./.deps/fixed-value.TPo ../../gcc-7.3.0/gcc/fixed-value.c
/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/xg++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/ -B/nix/store/wamwzihkc4l9vqqbdyqsbw5qzmndhbnh-gfortran-7.3.0/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/tmp/nix-build-gfortran-7.3.0.drv-0/gcc-7.3.0/libstdc++-v3/libsupc++ -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -fno-PIE -c   -O2 -I/nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -B/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib/ -idirafter /nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -idirafter /nix/store/bkl2zbbvhq8ykn7536gi5y17q2sb0wnd-gcc-7.3.0/lib/gcc/x86_64-unknown-linux-gnu/7.3.0/include-fixed -Wl,-rpath,/nix/store/bk73f2l94ad6n8sf2l1hjhziimn7si79-gfortran-7.3.0-lib/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-rpath -Wl,/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -gtoggle -DIN_GCC     -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc-7.3.0/gcc -I../../gcc-7.3.0/gcc/. -I../../gcc-7.3.0/gcc/../include -I../../gcc-7.3.0/gcc/../libcpp/include -I/nix/store/15c2af1gzqi9d0hpy0dh7b6glrx93hjj-gmp-6.1.2-dev/include -I/nix/store/b87qsjyrrn2s8bvabxrlmxrqpla79q52-mpfr-4.0.1-dev/include -I/nix/store/0faq00yqqyjlxy40a9nrjh94qhbj1zj9-libmpc-1.1.0/include  -I../../gcc-7.3.0/gcc/../libdecnumber -I../../gcc-7.3.0/gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc-7.3.0/gcc/../libbacktrace -I/nix/store/p2na74w3finvidh6agvnzwd3hs26lcsy-isl-0.17.1/include  -o fold-const.o -MT fold-const.o -MMD -MP -MF ./.deps/fold-const.TPo ../../gcc-7.3.0/gcc/fold-const.c
/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/xg++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/ -B/nix/store/wamwzihkc4l9vqqbdyqsbw5qzmndhbnh-gfortran-7.3.0/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/tmp/nix-build-gfortran-7.3.0.drv-0/gcc-7.3.0/libstdc++-v3/libsupc++ -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -fno-PIE -c   -O2 -I/nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -B/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib/ -idirafter /nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -idirafter /nix/store/bkl2zbbvhq8ykn7536gi5y17q2sb0wnd-gcc-7.3.0/lib/gcc/x86_64-unknown-linux-gnu/7.3.0/include-fixed -Wl,-rpath,/nix/store/bk73f2l94ad6n8sf2l1hjhziimn7si79-gfortran-7.3.0-lib/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-rpath -Wl,/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -gtoggle -DIN_GCC     -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc-7.3.0/gcc -I../../gcc-7.3.0/gcc/. -I../../gcc-7.3.0/gcc/../include -I../../gcc-7.3.0/gcc/../libcpp/include -I/nix/store/15c2af1gzqi9d0hpy0dh7b6glrx93hjj-gmp-6.1.2-dev/include -I/nix/store/b87qsjyrrn2s8bvabxrlmxrqpla79q52-mpfr-4.0.1-dev/include -I/nix/store/0faq00yqqyjlxy40a9nrjh94qhbj1zj9-libmpc-1.1.0/include  -I../../gcc-7.3.0/gcc/../libdecnumber -I../../gcc-7.3.0/gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc-7.3.0/gcc/../libbacktrace -I/nix/store/p2na74w3finvidh6agvnzwd3hs26lcsy-isl-0.17.1/include  -o fold-const-call.o -MT fold-const-call.o -MMD -MP -MF ./.deps/fold-const-call.TPo ../../gcc-7.3.0/gcc/fold-const-call.c
/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/xg++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/ -B/nix/store/wamwzihkc4l9vqqbdyqsbw5qzmndhbnh-gfortran-7.3.0/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/tmp/nix-build-gfortran-7.3.0.drv-0/gcc-7.3.0/libstdc++-v3/libsupc++ -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -fno-PIE -c   -O2 -I/nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -B/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib/ -idirafter /nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -idirafter /nix/store/bkl2zbbvhq8ykn7536gi5y17q2sb0wnd-gcc-7.3.0/lib/gcc/x86_64-unknown-linux-gnu/7.3.0/include-fixed -Wl,-rpath,/nix/store/bk73f2l94ad6n8sf2l1hjhziimn7si79-gfortran-7.3.0-lib/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-rpath -Wl,/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -gtoggle -DIN_GCC     -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc-7.3.0/gcc -I../../gcc-7.3.0/gcc/. -I../../gcc-7.3.0/gcc/../include -I../../gcc-7.3.0/gcc/../libcpp/include -I/nix/store/15c2af1gzqi9d0hpy0dh7b6glrx93hjj-gmp-6.1.2-dev/include -I/nix/store/b87qsjyrrn2s8bvabxrlmxrqpla79q52-mpfr-4.0.1-dev/include -I/nix/store/0faq00yqqyjlxy40a9nrjh94qhbj1zj9-libmpc-1.1.0/include  -I../../gcc-7.3.0/gcc/../libdecnumber -I../../gcc-7.3.0/gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc-7.3.0/gcc/../libbacktrace -I/nix/store/p2na74w3finvidh6agvnzwd3hs26lcsy-isl-0.17.1/include  -o function.o -MT function.o -MMD -MP -MF ./.deps/function.TPo ../../gcc-7.3.0/gcc/function.c
/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/xg++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/./prev-gcc/ -B/nix/store/wamwzihkc4l9vqqbdyqsbw5qzmndhbnh-gfortran-7.3.0/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/tmp/nix-build-gfortran-7.3.0.drv-0/gcc-7.3.0/libstdc++-v3/libsupc++ -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/tmp/nix-build-gfortran-7.3.0.drv-0/build/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -fno-PIE -c   -O2 -I/nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -B/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib/ -idirafter /nix/store/q9d0m57yy26ih2sn1xpjs22q4y2039kw-glibc-2.27-dev/include -idirafter /nix/store/bkl2zbbvhq8ykn7536gi5y17q2sb0wnd-gcc-7.3.0/lib/gcc/x86_64-unknown-linux-gnu/7.3.0/include-fixed -Wl,-rpath,/nix/store/bk73f2l94ad6n8sf2l1hjhziimn7si79-gfortran-7.3.0-lib/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-rpath -Wl,/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -Wl,-L/nix/store/l0adcz8y05vajfi483a7qv31i03rspqq-glibc-2.27/lib -gtoggle -DIN_GCC     -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc-7.3.0/gcc -I../../gcc-7.3.0/gcc/. -I../../gcc-7.3.0/gcc/../include -I../../gcc-7.3.0/gcc/../libcpp/include -I/nix/store/15c2af1gzqi9d0hpy0dh7b6glrx93hjj-gmp-6.1.2-dev/include -I/nix/store/b87qsjyrrn2s8bvabxrlmxrqpla79q52-mpfr-4.0.1-dev/include -I/nix/store/0faq00yqqyjlxy40a9nrjh94qhbj1zj9-libmpc-1.1.0/include  -I../../gcc-7.3.0/gcc/../libdecnumber -I../../gcc-7.3.0/gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc-7.3.0/gcc/../libbacktrace -I/nix/store/p2na74w3finvidh6agvnzwd3hs26lcsy-isl-0.17.1/include  -o function-tests.o -MT function-tests.o -MMD -MP -MF ./.deps/function-tests.TPo ../../gcc-7.3.0/gcc/function-tests.c
building of ‘/nix/store/9g2xplw846nkvlrbc4khfpw1sj6pyxhj-gfortran-7.3.0.drv’ timed out after 1800 seconds
cannot build derivation ‘/nix/store/9k2wvrc0y4sapfkq6jms915gamk49c9v-gfortran-wrapper-7.3.0.drv’: 1 dependencies couldn't be built
cannot build derivation ‘/nix/store/fmy8phbqlzypnmx82d3rxm8v8ghhk59j-openblas-0.3.1.drv’: 1 dependencies couldn't be built
error: build of ‘/nix/store/fmy8phbqlzypnmx82d3rxm8v8ghhk59j-openblas-0.3.1.drv’ failed

GrahamcOfBorg · 2018-07-09T00:02:16Z

Success on aarch64-linux (full log)

Attempted: openblas

Partial log (click to expand)

Install OK!
make[1]: Leaving directory '/build/source'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/80kfvybz079mmazc35n3ail0r2gf0mv8-openblas-0.3.1
shrinking /nix/store/80kfvybz079mmazc35n3ail0r2gf0mv8-openblas-0.3.1/lib/libopenblas_armv8p-r0.3.1.so
strip is /nix/store/7iyn7gn33i7xxjgmwf25k20246y6nd9d-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/80kfvybz079mmazc35n3ail0r2gf0mv8-openblas-0.3.1/lib  /nix/store/80kfvybz079mmazc35n3ail0r2gf0mv8-openblas-0.3.1/bin
patching script interpreter paths in /nix/store/80kfvybz079mmazc35n3ail0r2gf0mv8-openblas-0.3.1
checking for references to /build in /nix/store/80kfvybz079mmazc35n3ail0r2gf0mv8-openblas-0.3.1...
/nix/store/80kfvybz079mmazc35n3ail0r2gf0mv8-openblas-0.3.1

GrahamcOfBorg · 2018-07-09T00:05:32Z

Failure on x86_64-darwin (full log)

Attempted: openblas

Partial log (click to expand)

cannot build derivation '/nix/store/gb4rc2r1h0g4pc6bmaafhhfg766yymbm-texinfo-6.5.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/aas4a5ipx5cfi1alnnr66c31g1r5jr5y-gfortran-7.3.0.drv': 9 dependencies couldn't be built
cannot build derivation '/nix/store/i1mgrrlfzdgwq6jglqfih3vhk00czqd0-libssh2-1.8.0.drv': 2 dependencies couldn't be built
cannot build derivation '/nix/store/1lmlvpfbn22w9sy293jxz62rj2l77b2f-nghttp2-1.32.0.drv': 5 dependencies couldn't be built
cannot build derivation '/nix/store/fzvm25lysd2d4xm0yawyq3sh3js03vc4-curl-7.60.0.drv': 6 dependencies couldn't be built
cannot build derivation '/nix/store/gcgy6ia0dwa78hcrk0d8lzmg7z2pip7p-gfortran-wrapper-7.3.0.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/98z98k2gsagdjmcjq4naibmr6wxnf5vg-1667.patch.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/9wz392jn13q9b16lh9pb5rhjvckqsy01-source.drv': 4 dependencies couldn't be built
cannot build derivation '/nix/store/r4kmyblsccmxcrb15xkdppp1y7l837gk-openblas-0.3.1.drv': 6 dependencies couldn't be built
�[31;1merror:�[0m build of '/nix/store/r4kmyblsccmxcrb15xkdppp1y7l837gk-openblas-0.3.1.drv' failed

timokau · 2018-07-09T11:36:14Z

Failures are dependency failures/timeouts.

FRidh · 2018-07-11T09:01:42Z

pkgs/development/libraries/science/math/openblas/default.nix

-  patches = []; # TODO: Remove on next mass-rebuild
+    patches = [
+      (fetchpatch {
+        url = "https://github.com/xianyi/OpenBLAS/pull/1667.patch";


Doesn't the contents change once someone pushes an update to the PR? I know it's been merged, but still.
The following should be stable:
https://github.com/xianyi/OpenBLAS/commit/5f2a3c05cd0e3872be3c5686b9da6b627658eeb7.patch

Yes, but since its merged I considered that safe. I'll change it though.

A little rant: Github didn't notify me about this review. Just swallowed the notification. I was just about to ask for a review when I saw it.

I changed the link. The reason I initially chose the /pull/1667.patch format is that conveniently doubles as information about the source. But a comment is better for that anyways.

OpenMathLib/OpenBLAS#1666 Causing test failures in cvxopt and (according to an openblas issue) numpy.

GrahamcOfBorg · 2018-07-11T20:47:06Z

Success on x86_64-linux (full log)

Attempted: openblas

Partial log (click to expand)

Install OK!
make[1]: Leaving directory '/build/source'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/pbxlydwa1frsywbghflgznrhaqvcsakk-openblas-0.3.1
shrinking /nix/store/pbxlydwa1frsywbghflgznrhaqvcsakk-openblas-0.3.1/lib/libopenblasp-r0.3.1.so
strip is /nix/store/fzsyclvxz1p2ia83caniy93v8cwarg0j-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/pbxlydwa1frsywbghflgznrhaqvcsakk-openblas-0.3.1/lib  /nix/store/pbxlydwa1frsywbghflgznrhaqvcsakk-openblas-0.3.1/bin
patching script interpreter paths in /nix/store/pbxlydwa1frsywbghflgznrhaqvcsakk-openblas-0.3.1
checking for references to /build in /nix/store/pbxlydwa1frsywbghflgznrhaqvcsakk-openblas-0.3.1...
/nix/store/pbxlydwa1frsywbghflgznrhaqvcsakk-openblas-0.3.1

GrahamcOfBorg · 2018-07-11T20:53:47Z

Failure on x86_64-darwin (full log)

Attempted: openblas

Partial log (click to expand)

 /nix/store/4q1c84f1ynfvsd85a932375sg0jc89v8-bootstrap-tools/bin/mkdir -p '/nix/store/z4zhfjld8lpsb4abrf7xlymc43kybhb7-patchutils-0.3.3/share/man/man1'
 /nix/store/4q1c84f1ynfvsd85a932375sg0jc89v8-bootstrap-tools/bin/install -c -m 644 doc/interdiff.1 doc/filterdiff.1 doc/fixcvsdiff.1 doc/rediff.1 doc/editdiff.1 doc/combinediff.1 doc/lsdiff.1 doc/splitdiff.1 doc/grepdiff.1 doc/recountdiff.1 doc/unwrapdiff.1 doc/dehtmldiff.1 doc/flipdiff.1 doc/espdiff.1 '/nix/store/z4zhfjld8lpsb4abrf7xlymc43kybhb7-patchutils-0.3.3/share/man/man1'
make[1]: Leaving directory '/private/tmp/nix-build-patchutils-0.3.3.drv-0/patchutils-0.3.3'
post-installation fixup
gzipping man pages under /nix/store/z4zhfjld8lpsb4abrf7xlymc43kybhb7-patchutils-0.3.3/share/man/
strip is /nix/store/4q1c84f1ynfvsd85a932375sg0jc89v8-bootstrap-tools/bin/strip
stripping (with command strip and flags -S) in /nix/store/z4zhfjld8lpsb4abrf7xlymc43kybhb7-patchutils-0.3.3/bin
cannot build derivation '/nix/store/fg6c76l48y9wyyg166k4ncjix1drwxd6-5f2a3c05cd0e3872be3c5686b9da6b627658eeb7.patch.drv': 4 dependencies couldn't be built
cannot build derivation '/nix/store/wvlra9780w9sjxyx3hjxbhqr2vqbsrjx-openblas-0.3.1.drv': 8 dependencies couldn't be built
�[31;1merror:�[0m build of '/nix/store/wvlra9780w9sjxyx3hjxbhqr2vqbsrjx-openblas-0.3.1.drv' failed

GrahamcOfBorg · 2018-07-11T21:38:10Z

Success on aarch64-linux (full log)

Attempted: openblas

Partial log (click to expand)

Install OK!
make[1]: Leaving directory '/build/source'
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/07x2brmqgx2ypak9i591w46lxlxdiz7n-openblas-0.3.1
shrinking /nix/store/07x2brmqgx2ypak9i591w46lxlxdiz7n-openblas-0.3.1/lib/libopenblas_armv8p-r0.3.1.so
strip is /nix/store/h0nc84ybvb8g724fwysvcghh1675wjli-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/07x2brmqgx2ypak9i591w46lxlxdiz7n-openblas-0.3.1/lib  /nix/store/07x2brmqgx2ypak9i591w46lxlxdiz7n-openblas-0.3.1/bin
patching script interpreter paths in /nix/store/07x2brmqgx2ypak9i591w46lxlxdiz7n-openblas-0.3.1
checking for references to /build in /nix/store/07x2brmqgx2ypak9i591w46lxlxdiz7n-openblas-0.3.1...
/nix/store/07x2brmqgx2ypak9i591w46lxlxdiz7n-openblas-0.3.1

GrahamcOfBorg added 10.rebuild-darwin: 101-500 10.rebuild-linux: 501+ labels Jul 8, 2018

This was referenced Jul 9, 2018

[WIP] pythonPackages.cvxopt: fix transient test failure #42918

Closed

sage: 8.2 -> 8.3 #43281

Merged

FRidh reviewed Jul 11, 2018

View reviewed changes

openblas: backport fix

d2f0fc1

OpenMathLib/OpenBLAS#1666 Causing test failures in cvxopt and (according to an openblas issue) numpy.

timokau force-pushed the openblas-backport branch from ddfacb9 to d2f0fc1 Compare July 11, 2018 20:07

7c6f434c merged commit 8988a59 into NixOS:staging Jul 12, 2018

timokau deleted the openblas-backport branch July 12, 2018 11:12

dtzWill mentioned this pull request Jul 12, 2018

openblas: "backport" another patch, fix crash w/Go and Octave #43423

Merged

9 tasks

timokau mentioned this pull request Jul 15, 2018

pythonPackages.cvxopt: temporarily disable tests #43564

Merged

9 tasks

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

openblas: backport fix #43234

openblas: backport fix #43234

timokau commented Jul 8, 2018 •

edited

GrahamcOfBorg commented Jul 8, 2018

GrahamcOfBorg commented Jul 9, 2018

GrahamcOfBorg commented Jul 9, 2018

timokau commented Jul 9, 2018

FRidh Jul 11, 2018

timokau Jul 11, 2018

timokau Jul 11, 2018

GrahamcOfBorg commented Jul 11, 2018

GrahamcOfBorg commented Jul 11, 2018

GrahamcOfBorg commented Jul 11, 2018

openblas: backport fix #43234

openblas: backport fix #43234

Conversation

timokau commented Jul 8, 2018 • edited

Motivation for this change

Things done

GrahamcOfBorg commented Jul 8, 2018

GrahamcOfBorg commented Jul 9, 2018

GrahamcOfBorg commented Jul 9, 2018

timokau commented Jul 9, 2018

FRidh Jul 11, 2018

Choose a reason for hiding this comment

timokau Jul 11, 2018

Choose a reason for hiding this comment

timokau Jul 11, 2018

Choose a reason for hiding this comment

GrahamcOfBorg commented Jul 11, 2018

GrahamcOfBorg commented Jul 11, 2018

GrahamcOfBorg commented Jul 11, 2018

timokau commented Jul 8, 2018 •

edited