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picard-tools: 2.18.9 -> 2.18.10 #43913

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merged 1 commit into from Jul 22, 2018
Merged

picard-tools: 2.18.9 -> 2.18.10 #43913

merged 1 commit into from Jul 22, 2018

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r-ryantm
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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

meta.description for picard-tools is: '"Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF."'.

Checks done (click to expand)
Test this build with Cachix (click to expand)

One time setup in nixpkgs Git checkout:

cachix use r-ryantm
git remote add r-ryantm https://github.com/r-ryantm/nixpkgs.git

Test this build:

git fetch r-ryantm && git checkout 668047ca55f17dd932e815e73bb567346e412e5c && nix-shell --pure -I nixpkgs=. -p picard-tools

cc @jbedo for testing.

picard-tools: 2.18.9 -> 2.18.10
668047c 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions.
@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: picard-tools

Partial log (click to expand)

building '/nix/store/ywsid2f1gi3bxg0nrc8s5p36fkzpzzq0-picard.jar.drv'...

trying https://github.com/broadinstitute/picard/releases/download/2.18.10/picard.jar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   600    0   600    0     0   1550      0 --:--:-- --:--:-- --:--:--  1546
100 14.7M  100 14.7M    0     0  4909k      0  0:00:03  0:00:03 --:--:-- 8956k
building '/nix/store/kd6m3rpk6am7jciq9xypv7nw85q4wnid-picard-tools-2.18.10.drv'...
installing
/nix/store/pqq8qd7mv6i8f88pjfzymljj8mi8lkam-picard-tools-2.18.10

@GrahamcOfBorg
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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: picard-tools

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnfree = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnfree = true; }
to ~/.config/nixpkgs/config.nix.

@GrahamcOfBorg
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Success on x86_64-darwin (full log)

Attempted: picard-tools

Partial log (click to expand)

building '/nix/store/n81ypi1xvv5f90k0b6s66k7d1qzd38qv-picard.jar.drv'...

trying https://github.com/broadinstitute/picard/releases/download/2.18.10/picard.jar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   600    0   600    0     0   1265      0 --:--:-- --:--:-- --:--:--  1265
100 14.7M  100 14.7M    0     0  4810k      0  0:00:03  0:00:03 --:--:-- 7283k
building '/nix/store/qc1iqrv6yrgv8i0fmkkx2dn6vhpdjr69-picard-tools-2.18.10.drv'...
installing
/nix/store/h7cj2hh8kgzfy320kd1zznvvm3rhnrb5-picard-tools-2.18.10

@FRidh FRidh merged commit 5dcb1fe into NixOS:master Jul 22, 2018
@r-ryantm r-ryantm deleted the auto-update/picard-tools branch July 23, 2018 02:45
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@r-ryantm @GrahamcOfBorg @FRidh