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gildas: 20180801_a -> 20180901_a #46159

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merged 2 commits into from Sep 25, 2018
Merged

gildas: 20180801_a -> 20180901_a #46159

merged 2 commits into from Sep 25, 2018

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smaret
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@smaret smaret commented Sep 6, 2018 •
edited

Motivation for this change

Update gildas to the latest upstream version.

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Fits CONTRIBUTING.md.

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smaret commented Sep 7, 2018

@GrahamcOfBorg build gildas

@smaret smaret mentioned this pull request Sep 7, 2018
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@xeji
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xeji commented Sep 7, 2018

@GrahamcOfBorg build gildas

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Success on x86_64-linux (full log)

Attempted: gildas

Partial log (click to expand)

shrinking /nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b/libexec/lib/libginc.so
shrinking /nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b/libexec/lib/libclassfit.so
strip is /nix/store/h0lbngpv6ln56hjj59i6l77vxq25flbz-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b/libexec  /nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b/bin
patching script interpreter paths in /nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b
/nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b/libexec/bin/gag-get-interfaces.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/q9ajsngf2w3r10dg7b1148wzq1avp4gj-perl-5.28.0/bin/perl -w"
/nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b/libexec/bin/gag-parse-messages.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/q9ajsngf2w3r10dg7b1148wzq1avp4gj-perl-5.28.0/bin/perl -w"
/nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b/libexec/bin/gag-format-f90.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/q9ajsngf2w3r10dg7b1148wzq1avp4gj-perl-5.28.0/bin/perl -w"
/nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b/bin/gildas-wrapper.sh: interpreter directive changed from "/bin/sh -e" to "/nix/store/czx8vkrb9jdgjyz8qfksh10vrnqa723l-bash-4.4-p23/bin/sh -e"
checking for references to /build in /nix/store/3dnsgmz6idw9as9mfdvg5vsj5bahwpr1-gildas-20180801_b...

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Failure on aarch64-linux (full log)

Attempted: gildas

Partial log (click to expand)

Warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized]
built/x86_64-linux-gfortran-openmp/deconv.f90:2318:0: Warning: 'i1' may be used uninitialized in this function [-Wmaybe-uninitialized]
make[3]: Leaving directory '/build/gildas-src-aug18b/packages/class/lib'
make[2]: *** [/build/gildas-src-aug18b/admin/Makefile.struct:19: default] Error 1
make[2]: Leaving directory '/build/gildas-src-aug18b/packages/class'
make[1]: *** [/build/gildas-src-aug18b/admin/Makefile.struct:19: default] Error 1
make[1]: Leaving directory '/build/gildas-src-aug18b/packages'
make: *** [/build/gildas-src-aug18b/admin/Makefile.struct:19: default] Error 1
builder for '/nix/store/ffxdmndzdx98c3v0q9s9v3r4vr2rix5p-gildas-20180801_b.drv' failed with exit code 2
error: build of '/nix/store/ffxdmndzdx98c3v0q9s9v3r4vr2rix5p-gildas-20180801_b.drv' failed

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xeji commented Sep 7, 2018

aarch64 failure is a regression, please have a look at it.

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Timed out, unknown build status on x86_64-darwin (full log)

Attempted: gildas

Partial log (click to expand)

gfortran -c   -fimplicit-none -Wuninitialized -Wunused-variable -Wunused-label   -I./ -I./built/x86_64-darwin-gfortran-openmp -I/private/tmp/nix-build-gildas-20180801_b.drv-0/gildas-src-aug18b/integ/x86_64-darwin-gfortran-openmp/include -Wrealloc-lhs-all -J./built/x86_64-darwin-gfortran-openmp -pipe -fno-backslash -fno-range-check -fno-second-underscore -fPIC -fopenmp -O built/x86_64-darwin-gfortran-openmp/calib-calibration.f90 -o built/x86_64-darwin-gfortran-openmp/calib-calibration.o
f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: command line option '-Wformat-security' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: unrecognized command line option '-Wno-unused-command-line-argument'
cpp  -P -traditional -C  -DIEEE="ieee" -DBITS64="bits64" -DDARWIN="darwin" -DFORTRAN2003_PP -ffreestanding -DGFORTRAN="gfortran" -DGFORTRAN_VERSION="730" -DCFITSIO="yes" -DATM2009="atm2009" -DPNG="yes" -DGAG_USE_GTK -DGAG_USE_OPENMP -DGAG_USE_POSIX -DGAG_USE_PYTHON -DGAG_USE_UNDERSCORE    calib-engines.f90 | grep -v \#pragma > built/x86_64-darwin-gfortran-openmp/calib-engines.f90
gfortran -c   -fimplicit-none -Wuninitialized -Wunused-variable -Wunused-label   -I./ -I./built/x86_64-darwin-gfortran-openmp -I/private/tmp/nix-build-gildas-20180801_b.drv-0/gildas-src-aug18b/integ/x86_64-darwin-gfortran-openmp/include -Wrealloc-lhs-all -J./built/x86_64-darwin-gfortran-openmp -pipe -fno-backslash -fno-range-check -fno-second-underscore -fPIC -fopenmp -O built/x86_64-darwin-gfortran-openmp/calib-engines.f90 -o built/x86_64-darwin-gfortran-openmp/calib-engines.o
f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: command line option '-Wformat-security' is valid for C/C++/ObjC/ObjC++ but not for Fortran
building of '/nix/store/vkmpgdc4nf9sa9d1pk4bnv64nc0p8wxl-gildas-20180801_b.drv' timed out after 3600 seconds
error: build of '/nix/store/vkmpgdc4nf9sa9d1pk4bnv64nc0p8wxl-gildas-20180801_b.drv' failed

@smaret
gildas: 20180801_a -> 20180801_b
fd05b19 
  - Update gildas
  - Remove a patch that has been applied upstream
@smaret
gildas: 20180801_b -> 20180901_a
df1acad
@smaret smaret changed the title gildas: 20180801_a -> 20180801_b gildas: 20180801_a -> 20180901_a Sep 25, 2018
@smaret
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smaret commented Sep 25, 2018

@GrahamcOfBorg build gildas

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Success on x86_64-linux (full log)

Attempted: gildas

Partial log (click to expand)

shrinking /nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a/libexec/lib/libclassfit.so
strip is /nix/store/h0lbngpv6ln56hjj59i6l77vxq25flbz-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a/libexec  /nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a/bin
patching script interpreter paths in /nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a
/nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a/libexec/bin/gag-get-interfaces.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/kdbzhdzm43r58smfx29x3233dagihxp5-perl-5.28.0/bin/perl -w"
/nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a/libexec/bin/gag-parse-messages.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/kdbzhdzm43r58smfx29x3233dagihxp5-perl-5.28.0/bin/perl -w"
/nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a/libexec/bin/gag-format-f90.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/kdbzhdzm43r58smfx29x3233dagihxp5-perl-5.28.0/bin/perl -w"
/nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a/bin/gildas-wrapper.sh: interpreter directive changed from "/bin/sh -e" to "/nix/store/czx8vkrb9jdgjyz8qfksh10vrnqa723l-bash-4.4-p23/bin/sh -e"
checking for references to /build in /nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a...
/nix/store/i2samn6b892vdhav0jb74vwgbs23xksy-gildas-20180901_a

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Success on aarch64-linux (full log)

Attempted: gildas

Partial log (click to expand)

shrinking /nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a/libexec/lib/liblapack.so
strip is /nix/store/y4ymnvgxygpq05h03kyzbj572zmh6zla-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a/libexec  /nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a/bin
patching script interpreter paths in /nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a
/nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a/libexec/bin/gag-format-f90.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/w48isnsy2535w5iry1xzw9rbsd5sxfsn-perl-5.28.0/bin/perl -w"
/nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a/libexec/bin/gag-get-interfaces.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/w48isnsy2535w5iry1xzw9rbsd5sxfsn-perl-5.28.0/bin/perl -w"
/nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a/libexec/bin/gag-parse-messages.pl: interpreter directive changed from "/usr/bin/perl -w" to "/nix/store/w48isnsy2535w5iry1xzw9rbsd5sxfsn-perl-5.28.0/bin/perl -w"
/nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a/bin/gildas-wrapper.sh: interpreter directive changed from "/bin/sh -e" to "/nix/store/fqm2x6kiay1q4vg7pqp4wp17bdijlyc3-bash-4.4-p23/bin/sh -e"
checking for references to /build in /nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a...
/nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a

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Success on aarch64-linux (full log)

Attempted: gildas

Partial log (click to expand)

these derivations will be built:
  /nix/store/5sw68ii5689xqdg7q1ih7zjadjsa0mbn-gildas-20180901_a.drv
waiting for locks or build slots...
/nix/store/kx0ixcpbclb8wadqv4m9nw3xglyk0slb-gildas-20180901_a

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Timed out, unknown build status on x86_64-linux (full log)

Attempted: gildas

Partial log (click to expand)


         par(2) = vinf

Warning: 'vinf' may be used uninitialized in this function [-Wmaybe-uninitialized]
cpp  -P -traditional -C  -DIEEE="ieee" -DBITS64="bits64" -DLINUX="linux" -DFORTRAN2003_PP -ffreestanding -DGFORTRAN="gfortran" -DGFORTRAN_VERSION="730" -DCFITSIO="yes" -DATM2009="atm2009" -DPNG="yes" -DGAG_USE_GTK -DGAG_USE_OPENMP -DGAG_USE_POSIX -DGAG_USE_PYTHON -DGAG_USE_UNDERSCORE    get.f90 | grep -v \#pragma > built/x86_64-linux-gfortran-openmp/get.f90
gfortran -c   -fimplicit-none -Wuninitialized -Wunused-variable -Wunused-label   -I./ -I./built/x86_64-linux-gfortran-openmp -I/build/gildas-src-sep18a/integ/x86_64-linux-gfortran-openmp/include -Wrealloc-lhs-all -J./built/x86_64-linux-gfortran-openmp -pipe -fno-backslash -fno-range-check -fno-second-underscore -fPIC -fopenmp -O built/x86_64-linux-gfortran-openmp/get.f90 -o built/x86_64-linux-gfortran-openmp/get.o
f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: command line option '-Wformat-security' is valid for C/C++/ObjC/ObjC++ but not for Fortran
building of '/nix/store/fsj979a020swyf6m6d7bqygi7mk4v79n-gildas-20180901_a.drv' timed out after 3600 seconds
error: build of '/nix/store/fsj979a020swyf6m6d7bqygi7mk4v79n-gildas-20180901_a.drv' failed

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xeji commented Sep 25, 2018

Thank you!

@xeji xeji merged commit 1e67ff3 into NixOS:master Sep 25, 2018
@smaret smaret deleted the gildas-update branch September 25, 2018 14:23
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@smaret @xeji @GrahamcOfBorg