NixOS · Sep 13, 2018 · Sep 13, 2018 · Sep 13, 2018 · Sep 13, 2018 · Sep 13, 2018
diff --git a/pkgs/desktops/gnome-2/default.nix b/pkgs/desktops/gnome-2/default.nix
@@ -35,8 +35,6 @@ let overridden = set // overrides; set = with overridden; {
 
   GConf = callPackage ./platform/GConf { };
 
-  gconfmm = callPackage ./platform/gconfmm { };
-
   libgnomecanvas = callPackage ./platform/libgnomecanvas { };
 
   libgnomecanvasmm = callPackage ./platform/libgnomecanvasmm { };

diff --git a/pkgs/desktops/gnome-2/platform/gconfmm/default.nix b/pkgs/desktops/gnome-2/platform/gconfmm/default.nix
diff --git a/pkgs/development/libraries/ceres-solver/default.nix b/pkgs/development/libraries/ceres-solver/default.nix
@@ -2,7 +2,7 @@
 , eigen
 , fetchurl
 , cmake
-, google-gflags ? null
+, google-gflags
 , glog
 , runTests ? false
 }:
@@ -21,7 +21,13 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ cmake ];
   buildInputs = [ eigen glog ]
-    ++ stdenv.lib.optional (google-gflags != null) google-gflags;
+    ++ stdenv.lib.optional runTests google-gflags;
+
+  # The Basel BUILD file conflicts with the cmake build directory on
+  # case-insensitive filesystems, eg. darwin.
+  preConfigure = ''
+    rm BUILD
+  '';
 
   doCheck = runTests;
 

diff --git a/pkgs/development/libraries/libndtypes/default.nix b/pkgs/development/libraries/libndtypes/default.nix
@@ -14,12 +14,14 @@ stdenv.mkDerivation rec {
     sha256 = "0dpvv13mrid8l5zkjlz18qvirz3nr0v98agx9bcvkqbiahlfgjli";
   };
 
-  makeFlags = [ "CONFIGURE_LDFLAGS='-shared'" ];
+  # Override linker with cc (symlink to either gcc or clang)
+  # Library expects to use cc for linking
+  configureFlags = [ "LD=${stdenv.cc.targetPrefix}cc" ];
 
   meta = {
     description = "Dynamic types for data description and in-memory computations";
     homepage = https://xnd.io/;
     license = lib.licenses.bsdOriginal;
     maintainers = with lib.maintainers; [ costrouc ];
   };
-}
+}
diff --git a/pkgs/development/libraries/libxnd/default.nix b/pkgs/development/libraries/libxnd/default.nix
@@ -17,10 +17,9 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ libndtypes ];
 
-  configureFlags = [ "XND_INCLUDE='-I${libndtypes}/include'"
-                     "XND_LINK='-L${libndtypes}/lib'" ];
-
-  makeFlags = [ "CONFIGURE_LDFLAGS='-shared'" ];
+  # Override linker with cc (symlink to either gcc or clang)
+  # Library expects to use cc for linking
+  configureFlags = [ "LD=${stdenv.cc.targetPrefix}cc" ];
 
   meta = {
     description = "General container that maps a wide range of Python values directly to memory";

diff --git a/pkgs/development/libraries/science/benchmark/papi/default.nix b/pkgs/development/libraries/science/benchmark/papi/default.nix
@@ -0,0 +1,30 @@
+{ stdenv
+, fetchurl
+}:
+
+stdenv.mkDerivation rec {
+  version = "5.6.0";
+  name = "papi-${version}";
+
+  src = fetchurl {
+    url = "https://bitbucket.org/icl/papi/get/papi-5-6-0-t.tar.gz";
+    sha256 = "13mngf9kl0y2wfxqvkad0smdaag7k8fvw82b4312gx62nwhc1i6r";
+  };
+
+  buildInputs = [ stdenv ];
+
+  preConfigure = ''
+    cd src
+  '';
+
+  doCheck = true;
+  checkTarget = "test";
+
+  meta = with stdenv.lib; {
+    homepage = https://icl.utk.edu/papi/;
+    description = "PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors";
+    license = licenses.bsdOriginal;
+    platforms = platforms.linux;
+    maintainers = [ maintainers.costrouc ];
+  };
+}
diff --git a/pkgs/development/libraries/science/math/scalapack/default.nix b/pkgs/development/libraries/science/math/scalapack/default.nix
@@ -0,0 +1,29 @@
+{ stdenv
+, fetchurl
+, gfortran
+, cmake
+, blas
+, liblapack
+, mpi
+}:
+
+stdenv.mkDerivation rec {
+  name = "scalapack-${version}";
+  version = "2.0.2";
+
+  src = fetchurl {
+    url = "http://www.netlib.org/scalapack/scalapack-${version}.tgz";
+    sha256 = "0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c";
+  };
+
+  buildInputs = [ cmake mpi liblapack blas gfortran ];
+
+  meta = with stdenv.lib; {
+    homepage = http://www.netlib.org/scalapack/;
+    description = "Library of high-performance linear algebra routines for parallel distributed memory machines";
+    license = licenses.bsdOriginal;
+    platforms = platforms.all;
+    maintainers = [ maintainers.costrouc ];
+  };
+
+}
diff --git a/pkgs/misc/calaos/installer/default.nix b/pkgs/misc/calaos/installer/default.nix
@@ -16,7 +16,10 @@ stdenv.mkDerivation rec {
 
   qmakeFlags = [ "REVISION=${version}" ];
 
-  installPhase = ''
+  installPhase = if stdenv.isDarwin then ''
+    mkdir -p $out/Applications
+    cp -a calaos_installer.app $out/Applications
+  '' else ''
     mkdir -p $out/bin
     cp -a calaos_installer $out/bin
   '';

diff --git a/pkgs/misc/cups/drivers/brlaser/default.nix b/pkgs/misc/cups/drivers/brlaser/default.nix
@@ -1,7 +1,6 @@
 { stdenv, fetchFromGitHub, cmake, zlib, cups }:
 
 stdenv.mkDerivation rec {
-
   name = "brlaser-${version}";
   version = "4";
 
@@ -12,11 +11,10 @@ stdenv.mkDerivation rec {
     sha256 = "1yy4mpf68c82h245srh2sd1yip29w6kx14gxk4hxkv496gf55lw5";
   };
 
-  buildInputs = [ cmake zlib cups ];
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ zlib cups ];
 
-  preConfigure = ''
-    cmakeFlags="$cmakeFlags -DCUPS_SERVER_BIN=$out/lib/cups/ -DCUPS_DATA_DIR=$out/share/cups/"
-  '';
+  cmakeFlags = [ "-DCUPS_SERVER_BIN=$out/lib/cups" "-DCUPS_DATA_DIR=$out/share/cups" ];
 
   meta = with stdenv.lib; {
     description = "A CUPS driver for Brother laser printers";
@@ -37,7 +35,7 @@ stdenv.mkDerivation rec {
       '';
     homepage = https://github.com/pdewacht/brlaser;
     license = licenses.gpl2;
-    platforms = platforms.unix;
+    platforms = platforms.linux;
     maintainers = with maintainers; [ StijnDW ];
   };
 }
diff --git a/pkgs/tools/package-management/cargo-update/default.nix b/pkgs/tools/package-management/cargo-update/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, callPackage, defaultCrateOverrides, fetchFromGitHub, cmake, libssh2, libgit2, openssl, zlib }:
+{ stdenv, callPackage, defaultCrateOverrides, fetchFromGitHub, cmake, curl, libssh2, libgit2, openssl, zlib }:
 
 ((callPackage ./cargo-update.nix {}).cargo_update {}).override {
   crateOverrides = defaultCrateOverrides // {
@@ -13,7 +13,9 @@
         sha256 = "1bvrdgcw2akzd78wgvsisvghi8pvdk3szyg9s46qxv4km9sf88s7";
       };
 
-      buildInputs = [ cmake libssh2 libgit2 openssl zlib ];
+      nativeBuildInputs = [ cmake ];
+      buildInputs = [ libssh2 libgit2 openssl zlib ]
+        ++ stdenv.lib.optional stdenv.isDarwin curl;
 
       meta = with stdenv.lib; {
         description = "A cargo subcommand for checking and applying updates to installed executables";

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
@@ -20619,6 +20619,10 @@ with pkgs;
   tetgen = callPackage ../applications/science/geometry/tetgen { }; # AGPL3+
   tetgen_1_4 = callPackage ../applications/science/geometry/tetgen/1.4.nix { }; # MIT
 
+  ### SCIENCE/BENCHMARK
+
+  papi = callPackage ../development/libraries/science/benchmark/papi { };
+
   ### SCIENCE/BIOLOGY
 
   alliance = callPackage ../applications/science/electronics/alliance { };
@@ -20810,6 +20814,10 @@ with pkgs;
 
   planarity = callPackage ../development/libraries/science/math/planarity { };
 
+  scalapack = callPackage ../development/libraries/science/math/scalapack {
+    mpi = openmpi;
+  };
+
   rankwidth = callPackage ../development/libraries/science/math/rankwidth { };
 
   fenics = callPackage ../development/libraries/science/math/fenics {