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openmpi: 3.1.0->3.1.2 #46007

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merged 2 commits into from Sep 29, 2018
Merged

openmpi: 3.1.0->3.1.2 #46007

merged 2 commits into from Sep 29, 2018

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markuskowa
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@markuskowa markuskowa commented Sep 3, 2018 •
edited

Motivation for this change

Update openmpi

Things done

Added an upstream patch from mpi4py to skip broken tests.

  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Fits CONTRIBUTING.md.

@markuskowa markuskowa changed the title [WIP] openmpi: 3.1.0->3.1.2 openmpi: 3.1.0->3.1.2 Sep 26, 2018
@markuskowa
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@GrahamcOfBorg build python36Packages.mpi4py

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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: python36Packages.mpi4py

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: python36Packages.mpi4py

Partial log (click to expand)

capable network such as Infiniband.
--------------------------------------------------------------------------
....s........................................ssssssss.........................................................................................................................................................................................................................................................ssssssssssssssssssssssss..........................................................ss...................................................................ssssssssssss............................................................sss....................s............................................sssss..........................................................................................................................................ssssss...........ssssss......s...s........................................................................................................................................s...ss............ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss.........................................ss.........................................ssssssssssssssssssssssssssssssssssssss
----------------------------------------------------------------------
Ran 1134 tests in 3.741s

OK (skipped=201)
[localhost:01391] 7 more processes have sent help message help-osc-pt2pt.txt / mpi-thread-multiple-not-supported
[localhost:01391] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
/nix/store/57bcawilm2x7jhmikki108gps7d8rpl8-python3.6-mpi4py-3.0.0

@markuskowa
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@GrahamcOfBorg build openmpi

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No attempt on aarch64-linux (full log)

The following builds were skipped because they don't evaluate on aarch64-linux: openmpi

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

@GrahamcOfBorg
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Success on x86_64-linux (full log)

Attempted: openmpi

Partial log (click to expand)

shrinking /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2/lib/libompitrace.so.40.10.0
shrinking /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2/lib/libmpi_usempif08.so.40.10.1
shrinking /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2/lib/libmpi_usempi_ignore_tkr.so.40.10.1
shrinking /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2/lib/openmpi/libompi_dbg_msgq.so
gzipping man pages under /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2/share/man/
strip is /nix/store/h0lbngpv6ln56hjj59i6l77vxq25flbz-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2/lib  /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2/bin
patching script interpreter paths in /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2
checking for references to /build in /nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2...
/nix/store/3771fcmyj0fj4jn4zndxmyrkm8sjprl5-openmpi-3.1.2

@matthewbauer matthewbauer merged commit 228d6f5 into NixOS:master Sep 29, 2018
@markuskowa
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Thanks!

@markuskowa markuskowa deleted the openmpi-up branch September 29, 2018 20:22
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