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python27Packages.pyfaidx: 0.5.7 -> 0.5.8 #78663

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merged 1 commit into from Jan 29, 2020

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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/python2.7-pyfaidx/versions.

meta.description for python27Packages.pyfaidx is: '"Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index"'.

meta.homepage for python27Packages.pyfaidx is: '"https://github.com/mdshw5/pyfaidx"

Checks done (click to expand)
Rebuild report (if merged into master) (click to expand)

28 total rebuild path(s)

7 package rebuild(s)

7 x86_64-linux rebuild(s)
7 i686-linux rebuild(s)
7 x86_64-darwin rebuild(s)
7 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
python27Packages.cnvkit
python27Packages.pyfaidx
python37Packages.cnvkit
python37Packages.pyfaidx
python38Packages.cnvkit
python38Packages.pyfaidx
truvari

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/a99jd8l3a5gfwbxdd2ks73a2x5496kfz-python2.7-pyfaidx-0.5.8 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)
For the Cachix download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A python27Packages.pyfaidx https://github.com/r-ryantm/nixpkgs/archive/579eb6ca8e547456a2cd2fb66065a5e9cf66dffa.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/a99jd8l3a5gfwbxdd2ks73a2x5496kfz-python2.7-pyfaidx-0.5.8
ls -la /nix/store/a99jd8l3a5gfwbxdd2ks73a2x5496kfz-python2.7-pyfaidx-0.5.8/bin

cc @jbedo for testing.

@ofborg ofborg bot requested a review from jbedo January 28, 2020 06:16
@marsam marsam merged commit 27001db into NixOS:master Jan 29, 2020
@r-ryantm r-ryantm deleted the auto-update/python2.7-pyfaidx branch January 30, 2020 19:52
anna328p pushed a commit to anna328p/nixpkgs that referenced this pull request Feb 2, 2020
…faidx

python27Packages.pyfaidx: 0.5.7 -> 0.5.8
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