NixOS · Apr 10, 2020 · Apr 11, 2020 · Apr 11, 2020 · Apr 11, 2020 · Apr 11, 2020
diff --git a/pkgs/applications/misc/megacmd/default.nix b/pkgs/applications/misc/megacmd/default.nix
@@ -22,13 +22,13 @@
 
 stdenv.mkDerivation rec {
   pname = "megacmd";
-  version = "1.1.0";
+  version = "1.2.0";
 
   src = fetchFromGitHub {
     owner = "meganz";
     repo = "MEGAcmd";
     rev = "${version}_Linux";
-    sha256 = "004j8m3xs6slx03g2g6wzr97myl2v3zc09wxnfar5c62a625pd53";
+    sha256 = "0czyhsms0a0237d6h9b21n9p4nm4zkjanhhbvw26k6266g6c1nyr";
     fetchSubmodules = true;
   };
 

diff --git a/pkgs/applications/version-management/git-and-tools/git-bug/default.nix b/pkgs/applications/version-management/git-and-tools/git-bug/default.nix
@@ -2,21 +2,21 @@
 
 buildGoModule rec {
   pname = "git-bug";
-  version = "0.7.0";
-  rev = "71580c41a931a1ad2c04682e0fd701661b716c95";
+  version = "0.7.1"; # the `rev` below pins the version of the source to get
+  rev = "2d64b85db71a17ff3277bbbf7ac9d8e81f8e416c";
   goPackagePath = "github.com/MichaelMure/git-bug";
 
   src = fetchFromGitHub {
     inherit rev;
     owner = "MichaelMure";
     repo = "git-bug";
-    sha256 = "0mhqvcwa6y3hrrv88vbp22k7swzr8xw6ipm80gdpx85yp8j2wdkh";
+    sha256 = "01ab3mlwh5g1vr3x85fppflg18gb8ip9mjfsp2b5rfigd9lxyyns";
   };
 
-  modSha256 = "1cfn49cijiarzzczrpd28x1k7ib98xyzlvn3zghwk2ngfgiah3ld";
+  modSha256 = "05wxvzsbhvz15596019vs7h09kynfsfjx3i5xyrl5xjzdxbaqbrq";
 
   buildFlagsArray = ''
-    -ldflags= 
+    -ldflags=
       -X ${goPackagePath}/commands.GitCommit=${rev}
       -X ${goPackagePath}/commands.GitLastTag=${version}
       -X ${goPackagePath}/commands.GitExactTag=${version}

diff --git a/pkgs/build-support/build-bazel-package/default.nix b/pkgs/build-support/build-bazel-package/default.nix
@@ -181,9 +181,9 @@ in stdenv.mkDerivation (fBuildAttrs // {
     done
     linkopts=()
     host_linkopts=()
-    for flag in $NIX_LD_FLAGS; do
-      linkopts+=( "--linkopt=$flag" )
-      host_linkopts+=( "--host_linkopt=$flag" )
+    for flag in $NIX_LDFLAGS; do
+      linkopts+=( "--linkopt=-Wl,$flag" )
+      host_linkopts+=( "--host_linkopt=-Wl,$flag" )
     done
 
     BAZEL_USE_CPP_ONLY_TOOLCHAIN=1 \

diff --git a/pkgs/data/fonts/nerdfonts/shas.nix b/pkgs/data/fonts/nerdfonts/shas.nix
@@ -24,6 +24,8 @@
 	"iA-Writer" = "0clksrxw6xcv5c1pbd8rl2rc3r15iak1qv8v6bn0j2mccjcss64z";
 	"IBMPlexMono" = "0xkfkpnkkrvjfiv624l7lpmfji107y7645w6ah47ijyg47yxkmsg";
 	"Inconsolata" = "14gbwc0k3d1j496w6pv9kry1pglswzd0armsdb0g1mqgzfdf1ci1";
+	"InconsolataGo" = "0c6yhx242d82dalyjas42qniy0jagqs47cfsfarwmzar6zg3lj5m";
+	"InconsolataLGC" = "1746nl1rz4hscfgbmd8642wq3z1wizvfjb50y3yyjsc1ixc1f0pd";
 	"Iosevka" = "1qqd4xh98vxb99rh2a2qv9gjclilhaw84pyqdpbx225qhvw9xlkb";
 	"JetBrainsMono" = "1kc8fyk1aczxkmn8dzv1gy6xfi2jywgahd8np576v2dn8kx16844";
 	"Lekton" = "0mny5j9bns9104wg2wmabdw0sl80c7i3dzp4j5mxh8jybx929d3i";
@@ -45,5 +47,6 @@
 	"Terminus" = "0g2ybs225fwxmvwfnanc32jc2lfnag3agmliv1vrb5mxyqzm53gj";
 	"Tinos" = "077n4k6yh4qbirfkl02zqn3057kymspr10zcbfkf4ldvifa36pjd";
 	"Ubuntu" = "1lzdrgb8vk5dwicxhvkgbain5phf88g3zgv5ya2ihh052xsl3qih";
+	"UbuntuMono" = "0wa8ri7f3g8vwd194q812qh8nzplnmhl5ak0yhgilmm44s46ad0h";
 	"VictorMono" = "18z92kwggfqwrd5m09yda55hcb4b159278lps6f9hr8icwki6v9q";
 }
diff --git a/pkgs/data/fonts/nerdfonts/update.sh b/pkgs/data/fonts/nerdfonts/update.sh
@@ -1,73 +1,21 @@
 #!/usr/bin/env nix-shell
-#! nix-shell -i bash -p rsstail nix-prefetch
+#! nix-shell -i bash -p nix-prefetch jq
 
-# NOTE: Before running this script, please make sure this list is up-to-date -
-# meaning there are no new fonts they provide at https://github.com/ryanoasis/nerd-fonts/releases/
-fonts=(
-	"3270"
-	Agave
-	AnonymousPro
-	Arimo
-	AurulentSansMono
-	BigBlueTerminal
-	BitstreamVeraSansMono
-	CascadiaCode
-	CodeNewRoman
-	Cousine
-	DaddyTimeMono
-	DejaVuSansMono
-	DroidSansMono
-	FantasqueSansMono
-	FiraCode
-	FiraMono
-	Go-Mono
-	Gohu
-	Hack
-	Hasklig
-	HeavyData
-	Hermit
-	iA-Writer
-	IBMPlexMono
-	Inconsolata
-	Iosevka
-	JetBrainsMono
-	Lekton
-	LiberationMono
-	Meslo
-	Monofur
-	Monoid
-	Mononoki
-	MPlus
-	Noto
-	OpenDyslexic
-	Overpass
-	ProFont
-	ProggyClean
-	RobotoMono
-	ShareTechMono
-	SourceCodePro
-	SpaceMono
-	Terminus
-	Tinos
-	Ubuntu
-	VictorMono
-)
-
-releases_url="https://github.com/ryanoasis/nerd-fonts/releases.atom"
-
-version="$(rsstail -1 -u "$releases_url" -H -l -r | sed -e '/^Title: /d' -e 's:.*/::' -e 's/^v//g' | sort -V | tail -1)"
-
-echo Using version "$version"
+latest_release=$(curl --silent https://api.github.com/repos/ryanoasis/nerd-fonts/releases/latest)
+version=$(jq -r '.tag_name' <<<"$latest_release")
 
 dirname="$(dirname "$0")"
-echo \""$version"\" > "$dirname/version.nix"
+echo \""${version#v}"\" >"$dirname/version.nix"
 
-base_url="https://github.com/ryanoasis/nerd-fonts/releases/download/v${version}"
+echo Using version "$version"
 
 printf '{\n' > "$dirname/shas.nix"
 
-for font in "${fonts[@]}"; do
-	printf '\t"%s" = "%s";\n' "$font" "$(nix-prefetch-url "${base_url}/${font}.zip")" >> "$dirname/shas.nix"
-done
+while
+  read -r name
+  read -r url
+do
+    printf '\t"%s" = "%s";\n' "${name%.*}" "$(nix-prefetch-url "$url")" >>"$dirname/shas.nix"
+done < <(jq -r '.assets[] | .name, .browser_download_url' <<<"$latest_release")
 
 printf '}\n' >> "$dirname/shas.nix"
diff --git a/pkgs/development/python-modules/arviz/default.nix b/pkgs/development/python-modules/arviz/default.nix
@@ -22,13 +22,13 @@
 
 buildPythonPackage rec {
   pname = "arviz";
-  version = "0.6.1";
+  version = "0.7.0";
 
   src = fetchFromGitHub {
     owner = "arviz-devs";
     repo = "arviz";
     rev = version;
-    sha256 = "1qc4piz18hfik32gj4v65ckwv516mppq2ac0jyqs21lhqfwbgv9w";
+    sha256 = "03hj7bkkj6kfqdk6ri2mp53wk4k7xpafxk01vgs6k9zg3rlnq7ny";
   };
 
   propagatedBuildInputs = [
@@ -69,8 +69,18 @@ buildPythonPackage rec {
   # data_numpyro, data_pyro, data_pystan, and plots.
   checkPhase = ''
     cd arviz/tests/
-    HOME=$TMPDIR pytest test_{data_cmdstan,data_emcee,data,data_tfp,\
-    diagnostics,plot_utils,rcparams,stats,stats_utils,utils}.py
+    export HOME=$TMPDIR
+    pytest \
+      base_tests/test_data.py \
+      base_tests/test_diagnostics.py \
+      base_tests/test_plot_utils.py \
+      base_tests/test_rcparams.py \
+      base_tests/test_stats.py \
+      base_tests/test_stats_utils.py \
+      base_tests/test_utils.py \
+      external_tests/test_data_cmdstan.py \
+      external_tests/test_data_emcee.py \
+      external_tests/test_data_tfp.py
   '';
 
   meta = with lib; {

diff --git a/pkgs/development/python-modules/pymc3/default.nix b/pkgs/development/python-modules/pymc3/default.nix
@@ -9,6 +9,8 @@
 , tqdm
 , six
 , h5py
+, arviz
+, packaging
 , pytest
 , nose
 , parameterized
@@ -37,6 +39,8 @@ buildPythonPackage rec {
     tqdm
     six
     h5py
+    arviz
+    packaging
   ];
 
   checkInputs = [

diff --git a/pkgs/development/python-modules/tensorflow-probability/default.nix b/pkgs/development/python-modules/tensorflow-probability/default.nix
@@ -1,15 +1,18 @@
 { lib
 , fetchFromGitHub
+, fetchpatch
 , buildBazelPackage
 , buildPythonPackage
 , python
 , setuptools
 , wheel
+, absl-py
 , tensorflow
 , six
 , numpy
 , decorator
 , cloudpickle
+, gast
 , hypothesis
 , scipy
 , matplotlib
@@ -18,7 +21,7 @@
 }:
 
 let
-  version = "0.7";
+  version = "0.8.0";
   pname = "tensorflow_probability";
 
   # first build all binaries and generate setup.py using bazel
@@ -28,21 +31,37 @@ let
     src = fetchFromGitHub {
       owner = "tensorflow";
       repo = "probability";
-      rev = "v${version}";
-      sha256 = "0sy9gmjcvmwciamqvd7kd9qw2wd7ksklk80815fsn7sj0wiqxjyd";
+      rev = "${version}";
+      sha256 = "07cm8zba8n0ihzdm3k4a4rsg5v62xxsfvcw4h0niz91c0parqjqy";
     };
 
+    patches = [
+      (fetchpatch {
+        name = "gast-0.3.patch";
+        url = "https://github.com/tensorflow/probability/commit/ae7a9d9771771ec1e7755a3588b9325f050a84cc.patch";
+        sha256 = "0kfhx30gshm8f3945na9yjjik71r20qmjzifbigaj4l8dwd9dz1a";
+        excludes = ["testing/*"];
+      })
+      (fetchpatch {
+        name = "cloudpickle-1.2.patch";
+        url = "https://github.com/tensorflow/probability/commit/78ef12b5afe3f567d16c70b74015ed1ddff1b0c8.patch";
+        sha256 = "12ms2xcljvvrnig0j78s3wfv4yf3bm5ps4rgfgv5lg2a8mzpc1ga";
+      })
+    ];
+
     nativeBuildInputs = [
       # needed to create the output wheel in installPhase
       python
       setuptools
       wheel
+      absl-py
+      tensorflow
     ];
 
     bazelTarget = ":pip_pkg";
 
     fetchAttrs = {
-      sha256 = "0sjjj9z1dhilhpc8pq4154czrb79z9cm044jvn75kxcjv6v5l2m5";
+      sha256 = "0135nxxvkmjzpd80r1g9fdkk9h62g0xlvp32g5zgk0hkma5kq0bx";
     };
 
     buildAttrs = {
@@ -75,6 +94,7 @@ in buildPythonPackage {
     numpy
     decorator
     cloudpickle
+    gast
   ];
 
   # Listed here:

diff --git a/pkgs/servers/zoneminder/default.nix b/pkgs/servers/zoneminder/default.nix
@@ -78,13 +78,13 @@ let
 
 in stdenv.mkDerivation rec {
   pname = "zoneminder";
-  version = "1.34.3";
+  version = "1.34.9";
 
   src = fetchFromGitHub {
     owner  = "ZoneMinder";
     repo   = "zoneminder";
     rev    = version;
-    sha256 = "0jp7950v36gxxzkwdp5i0312s26czhfsl5ixdxfzn21cx31hhlg0";
+    sha256 = "1xvgfsm260a3v0vqgbk7m9jzayhcs4ysyadnnxajyrndjhn802ic";
   };
 
   patches = [
@@ -170,10 +170,6 @@ in stdenv.mkDerivation rec {
     "-DZM_CONFIG_DIR=${placeholder "out"}/etc/zoneminder"
     "-DZM_WEB_USER=${user}"
     "-DZM_WEB_GROUP=${user}"
-
-    # Workaround issue in CMakeLists.txt where ZM_CGIDIR set to ${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBEXECDIR}/zoneminder/cgi-bin
-    # But CMAKE_INSTALL_LIBEXECDIR is already an absolute path from cmake setup-hook
-    "-DZM_CGIDIR=${placeholder "out"}/libexec/zoneminder/cgi-bin"
   ];
 
   passthru = { inherit dirName; };

diff --git a/pkgs/tools/misc/starship/default.nix b/pkgs/tools/misc/starship/default.nix
@@ -3,13 +3,13 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "starship";
-  version = "0.39.0";
+  version = "0.40.0";
 
   src = fetchFromGitHub {
     owner = "starship";
     repo = pname;
     rev = "v${version}";
-    sha256 = "13phic9898wjc4b000nkwhy24yczn3dyhw8pqcaqhyzxdaj3gwmw";
+    sha256 = "11x5j91dank0zgxy1y5abhfymyzf3fpfvw6g1ll23vwxmspm8f4w";
   };
 
   nativeBuildInputs = stdenv.lib.optionals stdenv.isLinux [ pkg-config ];
@@ -22,7 +22,7 @@ rustPlatform.buildRustPackage rec {
       --replace "/bin/echo" "echo"
   '';
 
-  cargoSha256 = "0ds19sjy0fd7psmqkw64scjf3ysi408i7c1qk9zvqkl4ghz8wymg";
+  cargoSha256 = "0z0k9nq6fjg30380yc1skdzw0mhfljhkpagm8mh5w9bz1bzyd45d";
   checkPhase = "cargo test -- --skip directory::home_directory --skip directory::directory_in_root";
 
   meta = with stdenv.lib; {

diff --git a/pkgs/tools/text/amber/default.nix b/pkgs/tools/text/amber/default.nix
@@ -4,16 +4,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "amber";
-  version = "0.5.3";
+  version = "0.5.4";
 
   src = fetchFromGitHub {
     owner = "dalance";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0k70rk19hwdlhhqm91x12xcb8r09kzpijs0xwhplrwdh86qfxymx";
+    sha256 = "0pqz3spb5lmrj7w8hynmah9nrcfjsb1s0bmrr0cng9a9jx8amwzn";
   };
 
-  cargoSha256 = "0g8n3r6bdsfl1417wnss3ggnv5ywz8mx53hjglshmln40552znh3";
+  cargoSha256 = "1ps70swh96xbfn4hng5krlmwvw2bwrl2liqvx9v9vy6pr86643s6";
 
   buildInputs = stdenv.lib.optional stdenv.isDarwin Security;
 

diff --git a/pkgs/top-level/php-packages.nix b/pkgs/top-level/php-packages.nix
@@ -939,7 +939,7 @@ in
       # pdo_firebird (7.4, 7.3, 7.2)
       { name = "pdo_mysql";
         internalDeps = with php.extensions; [ pdo mysqlnd ];
-        configureFlags = [ "--with-pdo-mysql=mysqlnd" ];
+        configureFlags = [ "--with-pdo-mysql=mysqlnd" "PHP_MYSQL_SOCK=/run/mysqld/mysqld.sock" ];
         doCheck = false; }
       # pdo_oci (7.4, 7.3, 7.2)
       { name = "pdo_odbc";