NixOS · Mar 27, 2020 · Mar 27, 2020 · Mar 27, 2020 · Mar 27, 2020 · Mar 27, 2020
diff --git a/pkgs/applications/gis/qgis/unwrapped.nix b/pkgs/applications/gis/qgis/unwrapped.nix
@@ -10,15 +10,15 @@ let
     [ qscintilla-qt5 gdal jinja2 numpy psycopg2
       chardet dateutil pyyaml pytz requests urllib3 pygments pyqt5 sip owslib six ];
 in mkDerivation rec {
-  version = "3.10.1";
+  version = "3.10.4";
   pname = "qgis";
   name = "${pname}-unwrapped-${version}";
 
   src = fetchFromGitHub {
     owner = "qgis";
     repo = "QGIS";
     rev = "final-${lib.replaceStrings ["."] ["_"] version}";
-    sha256 = "0xq0nnp7zdqaihqvh5rsi1129g23vnk5ijkpxfzaggafgmhf5hgz";
+    sha256 = "0d1rsgjgnnq6jgms5bgppz8lkh4518nf90fk0qvxajdfi9j4jn12";
   };
 
   passthru = {

diff --git a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix
@@ -20,13 +20,13 @@ let
   pname = "wire-desktop";
 
   version = {
-    x86_64-darwin = "3.12.3490";
-    x86_64-linux = "3.12.2916";
+    x86_64-darwin = "3.15.3621";
+    x86_64-linux = "3.16.2923";
   }.${system} or throwSystem;
 
   sha256 = {
-    x86_64-darwin = "0xvhx3r99fl1v1cdqj6sk46kzxv9qi7j754amkhv7knrpmgyp55z";
-    x86_64-linux = "0xx03cpy6kapbjpygwranxjg1a0p8s1xq3cpapvi55rnkbk0qvjw";
+    x86_64-darwin = "13sgakb3zjlvqv6d6b264fc9x99swpl7s1dmnrgc5v3pgyaklr01";
+    x86_64-linux = "0c8jmlsg2gnxsvly04xj1al80nj52rg4czfdha58sg14x14lyspz";
   }.${system} or throwSystem;
 
   meta = with stdenv.lib; {
@@ -121,7 +121,7 @@ let
 
     src = fetchurl {
       url = "https://github.com/wireapp/wire-desktop/releases/download/"
-      + "macos%2F${version}/Wire.pkg";
+      + "wrapper_macos_production%2F${version}/Wire.pkg";
       inherit sha256;
     };
 

diff --git a/pkgs/development/libraries/proj/default.nix b/pkgs/development/libraries/proj/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "proj";
-  version = "6.1.1";
+  version = "6.3.1";
 
   src = fetchFromGitHub {
     owner = "OSGeo";
     repo = "PROJ";
     rev = version;
-    sha256 = "0w2v2l22kv0xzq5hwl7n8ki6an8vfsr0lg0cdbkwcl4xv889ysma";
+    sha256 = "1ildcp57qsa01kvv2qxd05nqw5mg0wfkksiv9l138dbhp0s7rkxp";
   };
 
   outputs = [ "out" "dev"];

diff --git a/pkgs/development/python-modules/pyproj/001.proj.patch b/pkgs/development/python-modules/pyproj/001.proj.patch
@@ -1,47 +1,62 @@
-diff a/pyproj/datadir.py b/pyproj/datadir.py
---- a/pyproj/datadir.py
-+++ b/pyproj/datadir.py
-@@ -52,6 +52,7 @@ def get_data_dir():
-     str: The valid data directory.
-
-     """
-+    return "@proj@/share/proj"
-     # to avoid re-validating
-     global _VALIDATED_PROJ_DATA
+diff -Nur a/pyproj/datadir.py b/pyproj/datadir.py
+--- a/pyproj/datadir.py	2020-03-24 12:53:39.417440608 +0100
++++ b/pyproj/datadir.py	2020-03-24 12:56:19.870089479 +0100
+@@ -66,9 +66,7 @@
      if _VALIDATED_PROJ_DATA is not None:
-diff a/setup.py b/setup.py
---- a/setup.py
-+++ b/setup.py
-@@ -16,7 +16,7 @@ INTERNAL_PROJ_DIR = os.path.join(CURRENT_FILE_PATH, "pyproj", BASE_INTERNAL_PROJ
-
+         return _VALIDATED_PROJ_DATA
+     global _USER_PROJ_DATA
+-    internal_datadir = os.path.join(
+-        os.path.dirname(os.path.abspath(__file__)), "proj_dir", "share", "proj"
+-    )
++    internal_datadir = "@proj@/share/proj"
+     proj_lib_dirs = os.environ.get("PROJ_LIB", "")
+     prefix_datadir = os.path.join(sys.prefix, "share", "proj")
+
+diff -Nur a/setup.py b/setup.py
+--- a/setup.py	2020-03-24 12:53:39.415440624 +0100
++++ b/setup.py	2020-03-24 12:52:05.311232522 +0100
+@@ -11,7 +11,7 @@
+ PROJ_MIN_VERSION = parse_version("6.2.0")
+ CURRENT_FILE_PATH = os.path.dirname(os.path.abspath(__file__))
+ BASE_INTERNAL_PROJ_DIR = "proj_dir"
+-INTERNAL_PROJ_DIR = os.path.join(CURRENT_FILE_PATH, "pyproj", BASE_INTERNAL_PROJ_DIR)
++INTERNAL_PROJ_DIR = "@proj@"
+
+
  def check_proj_version(proj_dir):
-     """checks that the PROJ library meets the minimum version"""
--    proj = os.path.join(proj_dir, "bin", "proj")
-+    proj = "@proj@/bin/proj"
-     proj_ver_bytes = subprocess.check_output(proj, stderr=subprocess.STDOUT)
-     proj_ver_bytes = (proj_ver_bytes.decode("ascii").split()[1]).strip(",")
-     proj_version = parse_version(proj_ver_bytes)
-@@ -33,6 +33,7 @@ def get_proj_dir():
-     """
-     This function finds the base PROJ directory.
-     """
-+    return "@proj@"
-     proj_dir = os.environ.get("PROJ_DIR")
-     if proj_dir is None and os.path.exists(INTERNAL_PROJ_DIR):
-         proj_dir = INTERNAL_PROJ_DIR
-@@ -56,6 +57,7 @@ def get_proj_libdirs(proj_dir):
-     """
-     This function finds the library directories
-     """
-+    return ["@proj@/lib"]
-     proj_libdir = os.environ.get("PROJ_LIBDIR")
-     libdirs = []
-     if proj_libdir is None:
-@@ -77,6 +79,7 @@ def get_proj_incdirs(proj_dir):
-     """
-     This function finds the include directories
-     """
-+    return ["@proj@/include"]
-     proj_incdir = os.environ.get("PROJ_INCDIR")
-     incdirs = []
-     if proj_incdir is None:
+@@ -146,7 +146,7 @@
+     # By default we'll try to get options PROJ_DIR or the local version of proj
+     proj_dir = get_proj_dir()
+     library_dirs = get_proj_libdirs(proj_dir)
+-    include_dirs = get_proj_incdirs(proj_dir)
++    include_dirs = get_proj_incdirs("@projdev@")
+
+     # setup extension options
+     ext_options = {
+diff -Nur a/test/conftest.py b/test/conftest.py
+--- a/test/conftest.py	2020-03-24 12:53:39.417440608 +0100
++++ b/test/conftest.py	2020-03-24 23:16:47.373972786 +0100
+@@ -1,6 +1,7 @@
+ import os
+ import shutil
+ import tempfile
++import stat
+
+ import pytest
+
+@@ -17,6 +18,15 @@
+     with tempfile.TemporaryDirectory() as tmpdir:
+         tmp_data_dir = os.path.join(tmpdir, "proj")
+         shutil.copytree(data_dir, tmp_data_dir)
++
++        # Data copied from the nix store is readonly (causes cleanup problem).
++        # Make it writable.
++        for r, d, files in os.walk(tmp_data_dir):
++            os.chmod(r, os.stat(r).st_mode | stat.S_IWUSR)
++            for f in files:
++                fpath = os.path.join(r, f)
++                os.chmod(fpath, os.stat(fpath).st_mode | stat.S_IWUSR)
++
+         try:
+             os.remove(os.path.join(str(tmp_data_dir), "ntv2_0.gsb"))
+         except OSError:
diff --git a/pkgs/development/python-modules/pyproj/default.nix b/pkgs/development/python-modules/pyproj/default.nix
@@ -1,34 +1,37 @@
-{ lib, buildPythonPackage, fetchFromGitHub, python, pkgs, pythonOlder, substituteAll
+{ lib, buildPythonPackage, fetchFromGitHub, python, pkgs, pythonOlder, isPy27, substituteAll
 , aenum
 , cython
 , pytest
 , mock
 , numpy
+, shapely
 }:
 
 buildPythonPackage rec {
   pname = "pyproj";
-  version = "2.2.2";
+  version = "2.6.0";
+  disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "pyproj4";
     repo = "pyproj";
     rev = "v${version}rel";
-    sha256 = "0mb0jczgqh3sma69k7237i38h09gxgmvmddls9hpw4f3131f5ax7";
+    sha256 = "0fyggkbr3kp8mlq4c0r8sl5ah58bdg2mj4kzql9p3qyrkcdlgixh";
   };
 
   # force pyproj to use ${pkgs.proj}
   patches = [
     (substituteAll {
       src = ./001.proj.patch;
       proj = pkgs.proj;
+      projdev = pkgs.proj.dev;
     })
   ];
 
   buildInputs = [ cython pkgs.proj ];
 
   propagatedBuildInputs = [
-    numpy
+    numpy shapely
   ] ++ lib.optional (pythonOlder "3.6") aenum;
 
   checkInputs = [ pytest mock ];
@@ -38,6 +41,9 @@ buildPythonPackage rec {
   checkPhase = ''
     pytest . -k 'not alternative_grid_name \
                  and not transform_wgs84_to_alaska \
+                 and not transformer_group__unavailable \
+                 and not transform_group__missing_best \
+                 and not datum \
                  and not repr' \
             --ignore=test/test_doctest_wrapper.py \
             --ignore=test/test_datadir.py