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pythonPackages.msgpack: 0.6.2 -> 1.0.0 #80855

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merged 1 commit into from Feb 26, 2020
Merged

pythonPackages.msgpack: 0.6.2 -> 1.0.0 #80855

merged 1 commit into from Feb 26, 2020

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pvdrz
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@pvdrz pvdrz commented Feb 23, 2020

Motivation for this change
Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS linux)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Ensured that relevant documentation is up to date
  • Fits CONTRIBUTING.md.

@NilsIrl NilsIrl mentioned this pull request Feb 24, 2020
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jonringer
jonringer reviewed Feb 25, 2020
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commit message should be:

pythonPackages.msgpack: 0.6.2 -> 1.0.0

@pvdrz pvdrz changed the title python-modules/msgpack: 0.6.2 -> 1.0.0 pythonPackages.msgpack: 0.6.2 -> 1.0.0 Feb 25, 2020
jonringer
jonringer approved these changes Feb 26, 2020
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diff LGTM

failures are broken on master

https://github.com/NixOS/nixpkgs/pull/80855
31 package failed to build:
python27Packages.locustio python27Packages.numcodecs python27Packages.zarr python37Packages.dask-jobqueue python37Packages.datashader python37Packages.dftfit python37Packages.intake python37Packages.lammps-cython python37Packages.locustio python37Packages.monty python37Packages.numcodecs python37Packages.pymatgen python37Packages.pymatgen-lammps python37Packages.streamz python37Packages.stumpy python37Packages.sumo python37Packages.wordfreq python37Packages.zarr python38Packages.dask-jobqueue python38Packages.datashader python38Packages.dftfit python38Packages.intake python38Packages.lammps-cython python38Packages.monty python38Packages.numcodecs python38Packages.pymatgen python38Packages.pymatgen-lammps python38Packages.streamz python38Packages.sumo python38Packages.wordfreq python38Packages.zarr

86 package built:
calibre gnvim maestral maestral-gui matrix-synapse neovim-qt neovim-remote pybitmessage python27Packages.Pyro4 python27Packages.cachecontrol python27Packages.cachy python27Packages.celery python27Packages.flower python27Packages.fluent-logger python27Packages.kombu python27Packages.mapbox python27Packages.msgpack python27Packages.msgpack-numpy python27Packages.poetry python27Packages.pynvim python27Packages.thinc python27Packages.zerorpc python37Packages.Pyro4 python37Packages.cachecontrol python37Packages.cachy python37Packages.celery python37Packages.channels-redis python37Packages.dask-ml python37Packages.dask-mpi python37Packages.dask-xgboost python37Packages.distributed python37Packages.django-raster python37Packages.django_redis python37Packages.djmail python37Packages.flower python37Packages.fluent-logger python37Packages.kombu python37Packages.mapbox python37Packages.msgpack python37Packages.msgpack-numpy python37Packages.poetry python37Packages.pynvim python37Packages.scikit-bio python37Packages.sentry-sdk python37Packages.spacy python37Packages.textacy python37Packages.thinc python37Packages.zerorpc python38Packages.Pyro4 python38Packages.cachecontrol python38Packages.cachy python38Packages.celery python38Packages.channels-redis python38Packages.dask-ml python38Packages.dask-mpi python38Packages.dask-xgboost python38Packages.distributed python38Packages.django-raster python38Packages.django_redis python38Packages.djmail python38Packages.flower python38Packages.fluent-logger python38Packages.kombu python38Packages.mapbox python38Packages.msgpack python38Packages.msgpack-numpy python38Packages.poetry python38Packages.pynvim python38Packages.scikit-bio python38Packages.spacy python38Packages.textacy python38Packages.thinc python38Packages.zerorpc salt sourcehut.buildsrht sourcehut.dispatchsrht sourcehut.gitsrht sourcehut.hgsrht sourcehut.listssrht sourcehut.mansrht sourcehut.metasrht sourcehut.pastesrht sourcehut.todosrht tebreak vimPlugins.sved zeronet

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nbfkp is my alias for nix build -f . --keep-going

[11:49:22] jon@jon-workstation ~/projects/nixpkgs (master)
$ nbfkg python27Packages.locustio python27Packages.numcodecs python27Packages.zarr python37Packages.dask-jobqueue python37Packages.datashader python37Packages.dftfit python37Packages.intake python37Packages.lammps-cython python37Packages.locustio python37Packages.monty python37Packages.numcodecs python37Packages.pymatgen python37Packages.pymatgen-lammps python37Packages.streamz python37Packages.stumpy python37Packages.sumo python37Packages.wordfreq python37Packages.zarr python38Packages.dask-jobqueue python38Packages.datashader python38Packages.dftfit python38Packages.intake python38Packages.lammps-cython
builder for '/nix/store/2qwcziwzamxma6akh5cgp9dsnzz4rrd8-python3.7-dask-jobqueue-0.7.0.drv' failed with exit code 1; last 10 log lines:
  E            +    and   'http://localhost:8787/status' = LSFCluster('tcp://localhost:44325', workers=0, threads=0, memory=0 B).dashboard_link

  dask_jobqueue/tests/test_jobqueue_core.py:70: AssertionError
  =============================== warnings summary ===============================
  dask_jobqueue/tests/test_jobqueue_core.py::test_command_template
    /nix/store/dp0h904xaqhhl6xapmba20bnpigd69gb-python3.7-tornado-5.1/lib/python3.7/site-packages/tornado/httputil.py:107: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
      class HTTPHeaders(collections.MutableMapping):

  -- Docs: https://docs.pytest.org/en/latest/warnings.html
  ============= 5 failed, 23 passed, 8 skipped, 1 warning in 25.63s ==============
builder for '/nix/store/s88ilv290wrm8g1zgbd1078i15w3az0p-python3.8-dask-jobqueue-0.7.0.drv' failed with exit code 1; last 10 log lines:
  E            +    and   'http://localhost:8787/status' = LSFCluster('tcp://localhost:46799', workers=0, threads=0, memory=0 B).dashboard_link

  dask_jobqueue/tests/test_jobqueue_core.py:70: AssertionError
  =============================== warnings summary ===============================
  dask_jobqueue/tests/test_jobqueue_core.py::test_command_template
    /nix/store/hvl3mhfpdj7ln85f70k7c7vgf9v95h8z-python3.8-tornado-5.1/lib/python3.8/site-packages/tornado/httputil.py:107: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
      class HTTPHeaders(collections.MutableMapping):

  -- Docs: https://docs.pytest.org/en/latest/warnings.html
  ============= 5 failed, 23 passed, 8 skipped, 1 warning in 25.57s ==============
builder for '/nix/store/h42r2friq18gy84rbz9q81d5hb7kpbzy-python3.7-intake-0.5.4.drv' failed with exit code 1; last 10 log lines:
  intake/catalog/tests/test_caching_integration.py::test_load_csv
    /build/intake-0.5.4/intake/source/discovery.py:302: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
      import imp

  intake/source/tests/test_csv.py::test_read_pattern_with_cache
    /build/intake-0.5.4/intake/source/cache.py:268: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
      logger.warn("Cache progress bar requires tqdm to be installed:"

  -- Docs: https://docs.pytest.org/en/latest/warnings.html
  = 3 failed, 420 passed, 12 skipped, 9 deselected, 4 warnings in 78.91s (0:01:18) =
builder for '/nix/store/qhri7kya23d97w54h4v51iydmgp8w9ma-python3.8-intake-0.5.4.drv' failed with exit code 1; last 10 log lines:
    /build/intake-0.5.4/intake/source/cache.py:268: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
      logger.warn("Cache progress bar requires tqdm to be installed:"

  -- Docs: https://docs.pytest.org/en/latest/warnings.html
  = 3 failed, 420 passed, 12 skipped, 9 deselected, 6 warnings in 79.97s (0:01:19) =
  Exception ignored in: <function Pool.__del__ at 0x7fffe308daf0>
  Traceback (most recent call last):
    File "/nix/store/sjxzb69a6dnrwy79dcddhmmqpaji8ghz-python3-3.8.1/lib/python3.8/multiprocessing/pool.py", line 268, in __del__
    File "/nix/store/sjxzb69a6dnrwy79dcddhmmqpaji8ghz-python3-3.8.1/lib/python3.8/multiprocessing/queues.py", line 362, in put
  AttributeError: 'NoneType' object has no attribute 'dumps'
builder for '/nix/store/31xx16hrmc9la3lccynqywl3fqa4rrn9-python3.7-streamz-0.5.2.drv' failed with exit code 1; last 10 log lines:
    /nix/store/dp0h904xaqhhl6xapmba20bnpigd69gb-python3.7-tornado-5.1/lib/python3.7/site-packages/tornado/httputil.py:107: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
      class HTTPHeaders(collections.MutableMapping):

  streamz/dataframe/tests/test_dataframes.py::test_windowing_n[<lambda>1-1-<lambda>4]
  streamz/dataframe/tests/test_dataframes.py::test_windowing_n[<lambda>1-1-<lambda>5]
    /build/streamz-0.5.2/streamz/dataframe/aggregations.py:98: RuntimeWarning: invalid value encountered in double_scalars
      result = result * n / (n - self.ddof)

  -- Docs: https://docs.pytest.org/en/latest/warnings.html
  = 800 failed, 744 passed, 5 skipped, 2 deselected, 80 xfailed, 56 xpassed, 8 warnings in 148.47s (0:02:28) =
builder for '/nix/store/wch41ivg37blc4sgb4sf4f6zbqca8z4l-python3.8-datashader-0.9.0.drv' failed with exit code 1; last 10 log lines:
  datashader/tests/test_xarray.py::test_count[source3]
  datashader/tests/test_xarray.py::test_count[source3]
  datashader/tests/test_xarray.py::test_count[source3]
  datashader/tests/test_xarray.py::test_count[source3]
  datashader/tests/test_xarray.py::test_count[source3]
    /build/datashader-0.9.0/datashader/core.py:1002: PendingDeprecationWarning: dropping variables using `drop` will be deprecated; using drop_vars is encouraged.
      source = source.drop([col for col in columns if col not in cols_to_keep])

  -- Docs: https://docs.pytest.org/en/latest/warnings.html
  ==== 11 failed, 530 passed, 13 skipped, 1041 warnings in 192.76s (0:03:12) =====
builder for '/nix/store/2k1c243smqa2d5f11xj4wbrlh1nin9nx-python3.7-datashader-0.9.0.drv' failed with exit code 1; last 10 log lines:
  datashader/tests/test_xarray.py::test_count[source3]
  datashader/tests/test_xarray.py::test_count[source3]
  datashader/tests/test_xarray.py::test_count[source3]
  datashader/tests/test_xarray.py::test_count[source3]
  datashader/tests/test_xarray.py::test_count[source3]
    /build/datashader-0.9.0/datashader/core.py:1002: PendingDeprecationWarning: dropping variables using `drop` will be deprecated; using drop_vars is encouraged.
      source = source.drop([col for col in columns if col not in cols_to_keep])

  -- Docs: https://docs.pytest.org/en/latest/warnings.html
  ===== 11 failed, 530 passed, 13 skipped, 57 warnings in 201.04s (0:03:21) ======
[0 built (7 failed), 12 copied (59.6 MiB), 35.0 MiB DL]
error: build of '/nix/store/2k1c243smqa2d5f11xj4wbrlh1nin9nx-python3.7-datashader-0.9.0.drv', '/nix/store/2qwcziwzamxma6akh5cgp9dsnzz4rrd8-python3.7-dask-jobqueue-0.7.0.drv', '/nix/store/31xx16hrmc9la3lccynqywl3fqa4rrn9-python3.7-streamz-0.5.2.drv', '/nix/store/h42r2friq18gy84rbz9q81d5hb7kpbzy-python3.7-intake-0.5.4.drv', '/nix/store/qhri7kya23d97w54h4v51iydmgp8w9ma-python3.8-intake-0.5.4.drv', '/nix/store/s88ilv290wrm8g1zgbd1078i15w3az0p-python3.8-dask-jobqueue-0.7.0.drv', '/nix/store/wch41ivg37blc4sgb4sf4f6zbqca8z4l-python3.8-datashader-0.9.0.drv' failed
[11:53:20] jon@jon-workstation ~/projects/nixpkgs (master)
$ nbfkg python27Packages.locustio python27Packages.numcodecs python27Packages.zarr python37Packages.dask-jobqueue python37Packages.datashader python37Packages.dftfit python37Packages.intake python37Packages.lammps-cython python37Packages.locustio python37Packages.monty python37Packages.numcodecs python37Packages.pymatgen python37Packages.pymatgen-lammps python37Packages.streamz python37Packages.stumpy python37Packages.sumo python37Packages.wordfreq python37Packages.zarr python38Packages.dask-jobqueue python38Packages.datashader python38Packages.dftfit python38Packages.intake python38Packages.lammps-cython ^C
[11:54:02] jon@jon-workstation ~/projects/nixpkgs (master)
$ nbfkg python38Packages.lammps-cython python38Packages.monty python38Packages.numcodecs python38Packages.pymatgen python38Packages.pymatgen-lammps python38Packages.streamz python38Packages.sumo python38Packages.wordfreq python38Packages.zarr
builder for '/nix/store/h0mbspl7cz3ic93rxj4izs8jk0rhh9kr-python3.8-mecab-python3-0.996.3.drv' failed with exit code 1; last 10 log lines:
  creating build/temp.linux-x86_64-3.8
  creating build/temp.linux-x86_64-3.8/src
  creating build/temp.linux-x86_64-3.8/src/MeCab
  gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/nix/store/if0cqgc0vkd5fdjbr40dabja1jrgjp2i-mecab-0.996/include -I/nix/store/sjxzb69a6dnrwy79dcddhmmqpaji8ghz-python3-3.8.1/include/python3.8 -c src/MeCab/MeCab_wrap.cpp -o build/temp.linux-x86_64-3.8/src/MeCab/MeCab_wrap.o -Wno-unused-variable
  src/MeCab/MeCab_wrap.cpp: In function ‘void SwigPyStaticVar_dealloc(PyDescrObject*)’:
  src/MeCab/MeCab_wrap.cpp:3120:3: error: ‘_PyObject_GC_UNTRACK’ was not declared in this scope; did you mean ‘PyObject_GC_UnTrack’?
   3120 |   _PyObject_GC_UNTRACK(descr);
        |   ^~~~~~~~~~~~~~~~~~~~
        |   PyObject_GC_UnTrack
  error: command 'gcc' failed with exit status 1
cannot build derivation '/nix/store/ignw9z395jh97bb3fq4hz2ivd8p8c7rp-python3.8-wordfreq-2.2.0.drv': 1 dependencies couldn't be built
builder for '/nix/store/97bx6v6bmbk6dph0lnmxmfbxdnq38wdm-python3.8-streamz-0.5.2.drv' failed with exit code 1; last 10 log lines:
    File "/nix/store/7p8rv75i88b9qx6kka6r2zxc1q92fyxf-python3.8-distributed-2.9.1/lib/python3.8/site-packages/distributed/client.py", line 381, in __del__
    File "/nix/store/7p8rv75i88b9qx6kka6r2zxc1q92fyxf-python3.8-distributed-2.9.1/lib/python3.8/site-packages/distributed/client.py", line 359, in release
    File "/nix/store/hvl3mhfpdj7ln85f70k7c7vgf9v95h8z-python3.8-tornado-5.1/lib/python3.8/site-packages/tornado/platform/asyncio.py", line 154, in add_callback
  AttributeError: 'NoneType' object has no attribute 'partial'
  Exception ignored in: <function Future.__del__ at 0x7ffff5a6d550>
  Traceback (most recent call last):
    File "/nix/store/7p8rv75i88b9qx6kka6r2zxc1q92fyxf-python3.8-distributed-2.9.1/lib/python3.8/site-packages/distributed/client.py", line 381, in __del__
    File "/nix/store/7p8rv75i88b9qx6kka6r2zxc1q92fyxf-python3.8-distributed-2.9.1/lib/python3.8/site-packages/distributed/client.py", line 359, in release
    File "/nix/store/hvl3mhfpdj7ln85f70k7c7vgf9v95h8z-python3.8-tornado-5.1/lib/python3.8/site-packages/tornado/platform/asyncio.py", line 154, in add_callback
  AttributeError: 'NoneType' object has no attribute 'partial'
[0 built (2 failed), 3 copied (4.5 MiB), 0.9 MiB DL]
error: build of '/nix/store/97bx6v6bmbk6dph0lnmxmfbxdnq38wdm-python3.8-streamz-0.5.2.drv', '/nix/store/ignw9z395jh97bb3fq4hz2ivd8p8c7rp-python3.8-wordfreq-2.2.0.drv' failed

@jonringer
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@GrahamcOfBorg build pythonPackages.msgpack python3Packages.msgpack python38Packages.msgpack

@jonringer jonringer merged commit fa83832 into NixOS:master Feb 26, 2020
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@jonringer jonringer jonringer approved these changes

@FRidh FRidh Awaiting requested review from FRidh

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