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jabref: 5.1 -> 5.2 #109870

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jabref: 5.1 -> 5.2 #109870

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r-ryantm
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Automatic update generated by nixpkgs-update tools. This update was made based on information from https://github.com/JabRef/jabref/releases.

meta.description for jabref is: "Open source bibliography reference manager"

meta.homepage for jabref is: "https://www.jabref.org"

meta.changelog for jabref is: ""

Updates performed
  • Version update
To inspect upstream changes
Impact
Checks done (click to expand)

Rebuild report (if merged into master) (click to expand)
4 total rebuild path(s)

1 package rebuild(s)

1 x86_64-linux rebuild(s)
1 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
1 aarch64-linux rebuild(s)


First fifty rebuilds by attrpath
jabref
Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/i9cw9ilw98pr7ba945aybjs2y9dqb04m-jabref-5.2 \
  --option binary-caches 'https://cache.nixos.org/ https://nix-community.cachix.org/' \
  --option trusted-public-keys '
  nix-community.cachix.org-1:mB9FSh9qf2dCimDSUo8Zy7bkq5CX+/rkCWyvRCYg3Fs=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(The Cachix cache is only trusted for this store-path realization.)
For the Cachix download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A jabref https://github.com/r-ryantm/nixpkgs/archive/94dc91c49d831df981f5d10c36fdd09cf6b9bc62.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/i9cw9ilw98pr7ba945aybjs2y9dqb04m-jabref-5.2
ls -la /nix/store/i9cw9ilw98pr7ba945aybjs2y9dqb04m-jabref-5.2/bin


Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as failed to build independent of the
change, simply because they are already broken on the target branch.

Result of nixpkgs-review run on x86_64-linux 1

1 package built:
  • jabref

Maintainer pings

cc @gebner for testing.

@Coda-Coda
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This doesn't work for me, when I use 5.2 I get the following error on running jabref
I am using NixOS 20.09

[...@nixos:~]$ jabref 
#
# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGSEGV (0xb) at pc=0x0000000000000000, pid=20993, tid=20994
#
# JRE version:  (15.0.1+9) (build )
# Java VM: OpenJDK 64-Bit Server VM (15.0.1+9, mixed mode, tiered, compressed oops, g1 gc, linux-amd64)
# Problematic frame:
# C  0x0000000000000000
#
# Core dump will be written. Default location: Core dumps may be processed with "/nix/store/lqv1qn0r19kzc9hhibj8k667049196wr-systemd-246.6/lib/systemd/systemd-coredump %P %u %g %s %t %c %h" (or dumping to /home/.../core.20993)
#
# An error report file with more information is saved as:
# /home/.../hs_err_pid20993.log
#
#
Aborted (core dumped)

@SuperSandro2000 SuperSandro2000 added the 9.needs: human intervention There were changes that bots cannot deal with. label Jan 20, 2021
@SuperSandro2000 SuperSandro2000 marked this pull request as draft January 20, 2021 22:34
@SuperSandro2000 SuperSandro2000 removed the 9.needs: human intervention There were changes that bots cannot deal with. label Jan 20, 2021
@stale
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stale bot commented Jul 20, 2021

I marked this as stale due to inactivity. → More info

@stale stale bot added the 2.status: stale https://github.com/NixOS/nixpkgs/blob/master/.github/STALE-BOT.md label Jul 20, 2021
@Coda-Coda Coda-Coda mentioned this pull request Jul 20, 2021
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@zoedsoupe
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trying to update to v5.3 via overlays I get the following error:

Builder called die: Cannot wrap '/nix/store/99drq22rvrxsigzalra0d80kj5f83p17-jabref-5.1/lib/runtime/bin/java' because it is not an executable file
Backtrace:
7 assertExecutable /nix/store/mnrankjvp65m4gr6yq92ghdd5i0mj9lc-hook/nix-support/setup-hook
36 makeWrapper /nix/store/mnrankjvp65m4gr6yq92ghdd5i0mj9lc-hook/nix-support/setup-hook
1330 genericBuild /nix/store/7gdji02y6rbnzv5mcxcf3mwksk785y8j-stdenv-linux/setup
2 main /nix/store/9krlzvny65gdc8s7kpb6lkx8cd02c25b-default-builder.sh

@stale stale bot removed the 2.status: stale https://github.com/NixOS/nixpkgs/blob/master/.github/STALE-BOT.md label Aug 17, 2021
@ryantm ryantm closed this Aug 17, 2021
@ryantm ryantm deleted the auto-update/jabref branch August 17, 2021 18:32
@zoedsoupe zoedsoupe mentioned this pull request Aug 17, 2021
11 tasks
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5 participants