Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

SPAdes: 3.14.0 -> 3.14.1 #87494

Merged
merged 1 commit into from May 18, 2020
Merged

SPAdes: 3.14.0 -> 3.14.1 #87494

merged 1 commit into from May 18, 2020

Conversation

r-ryantm
Copy link
Contributor

Semi-automatic update generated by nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/SPAdes/versions.

meta.description for SPAdes is: "St. Petersburg genome assembler: assembly toolkit containing various assembly pipelines"

meta.homepage for SPAdes is: "http://cab.spbu.ru/software/spades/"

Updates performed
  • Version update
To inspect upstream changes
Impact
Checks done (click to expand)

Rebuild report (if merged into master) (click to expand)
4 total rebuild path(s)

1 package rebuild(s)

1 x86_64-linux rebuild(s)
1 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
1 aarch64-linux rebuild(s)


First fifty rebuilds by attrpath
SPAdes
Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/q57rkayha7nbxp435pwciinp0b532prp-SPAdes-3.14.1 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)
For the Cachix download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A SPAdes https://github.com/r-ryantm/nixpkgs/archive/85b39960b5e83c3113365b754925449df64929f9.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/q57rkayha7nbxp435pwciinp0b532prp-SPAdes-3.14.1
ls -la /nix/store/q57rkayha7nbxp435pwciinp0b532prp-SPAdes-3.14.1/bin


Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as failed to build independent of the
change, simply because they are already broken on the target branch.

Result of nixpkgs-review 1

1 package built:
- SPAdes

Maintainer pings

cc @bzizou for testing.

@bzizou
Copy link
Contributor

bzizou commented May 18, 2020

Local compilation in progress...

Copy link
Contributor

@bzizou bzizou left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Locally tested. All binaries are ok for me!

@ryantm ryantm merged commit fdf4439 into NixOS:master May 18, 2020
@r-ryantm r-ryantm deleted the auto-update/SPAdes branch May 19, 2020 00:01
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

3 participants