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The
Rebase
button discards past (and ongoing) manœuvres, and sets the flight plan initial state to the current state (in terms of mass as well as position and velocity).Drive-by change: drop the guidance node for one frame when it switches manœuvres; this fixes MuMech/MechJeb2#1276 (though @lamont-granquist wants to leave that one open until the UX is cleaned up a little) and the stock equivalent, whereby guiding to the manœuvre through scheduled burnout would lead to a reorientation to the next manœuvre with the engines still firing.
After this change, at the scheduled end of the burn, MechJeb ceases burn execution (shutting down the engines), and the stock SAS switches to holding attitude.