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The thresholding toggle now switches between this behaviour when off and the Fubini behaviour + PID (as in test2550) when on.
There seems to be an improvement: in the save given in #2519 (comment), the vessel now explodes on reentry as it does in stock (the oscillations no longer slow it down enough for it to make it to the water unharmed).
However:
Perhaps some PID tuning might help with those issues (especially 1).