Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/urh/versions

Mutter have shipped its own `clutter` for ages, we need json-glib however which
clutter propagated.

In NixOS extra capabilities are provided through the ambient set which provides
real inheritability to user run processes [0].

We don't want gome-shell to spawn processes with cap_sys_nice however (apart
from the obvious this also breaks eg. flatpaks). So we drop inheritable when
starting to prevent further inheritance (the ambient set is only propagated
if inherit is set).

[0] torvalds/linux@5831905

We create a wrapper which launches gnome-shell with the correct environment and
cap_sys_nice.

We can then override gnome-shell-wayland.service to use this wrapper.

NOTE: We need to force clear the environment, because the defaults aren't good
for user services. That should probably be fixed.

* Fix path in module for slurm to find plugstack.conf
* Fix configure flags so that slurm can be compiled
  without internal X11 support (required for spank-x11).

Slurmdbd requires a password database which is stored in slurmdbd.conf.
A seperate config file avoids that the password ends up in the nix store.

Slurmdbd does 19.5 does not support MySQL socket conections.
Adapated the slurm test to provide username and password.

For a list of changes and additions see: https://github.com/tj/git-extras/releases/tag/5.0.0

diffoscope: 127 -> 129

The pythonPackages.trezor_agent existed since earlier, now we
also add a top-level package by making use of `toPythonApplication`.

gitAndTools.git-extras: 4.7.0 -> 5.0.0

pithos: 1.4.1 -> 1.5.0

Enable soft real time for gnome shell

Useful for newcomers who want to do their review after committing and then stumbling across the PR checklist.

* replace nix-shell with nix run

nixos/slurm: fix test and X11 options

Fix build:
* add wrapQtApps
* add setup tools

5.2.x kernels are EOL

tokei: 10.0.1 -> 10.1.0

urh: 2.7.3 -> 2.8.0

+ run tests
+ enable jitterentropy by default
+ add c0bw3b to maintainers

open-policy-agent: init at 0.15.0

 (#73257)

why3: 1.2.0 → 1.2.1