netcdfcxx4: 4.3.0 -> 4.3.1 #69692

r-ryantm · 2019-09-27T20:02:20Z

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/netcdf-cxx4/versions.

meta.description for netcdfcxx4 is: '"C++ API to manipulate netcdf files"'.

meta.homepage for netcdfcxx4 is: '"https://www.unidata.ucar.edu/software/netcdf/"

Release on GitHub

Compare changes on GitHub

Checks done (click to expand)

built on NixOS
The tests defined in passthru.tests, if any, passed
0 of 0 passed binary check by having a zero exit code.
0 of 0 passed binary check by having the new version present in output.
found 4.3.1 with grep in /nix/store/fw2q16c302kmasi4gg6q807xicgnvv8k-netcdf-cxx4-4.3.1
directory tree listing: https://gist.github.com/84fcda2d7f372d4e6640f4a85720bfd3
du listing: https://gist.github.com/e3ec0e948193e42fb45d1168a296cee2

Rebuild report (if merged into master) (click to expand)

7 total rebuild path(s)

2 package rebuild(s)

2 x86_64-linux rebuild(s)
2 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
2 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
nco
netcdfcxx4

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/fw2q16c302kmasi4gg6q807xicgnvv8k-netcdf-cxx4-4.3.1 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A netcdfcxx4 https://github.com/r-ryantm/nixpkgs/archive/b26c87acf46ec0b0e9f8c3e6050dea6acef76d24.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/fw2q16c302kmasi4gg6q807xicgnvv8k-netcdf-cxx4-4.3.1
ls -la /nix/store/fw2q16c302kmasi4gg6q807xicgnvv8k-netcdf-cxx4-4.3.1/bin

c0bw3b · 2019-10-18T18:42:47Z

Yup, now there is a second Darwin-only linking issue with hdf5

FRidh · 2020-02-06T19:21:04Z

@c0bw3b this needed more work?

ryantm · 2020-11-17T04:47:56Z

@GrahamcOfBorg eval

SuperSandro2000 · 2020-11-23T19:46:34Z

LGTM. Can this be merged now?

ryantm · 2020-11-23T19:50:53Z

@SuperSandro2000 does it work on darwin for you?

SuperSandro2000 · 2020-11-23T20:03:49Z

@r-ryantm nope

Making all in plugins
make[2]: Entering directory '/private/tmp/nix-build-netcdf-cxx4-4.3.1.drv-0/source/plugins'
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=compile clang -DHAVE_CONFIG_H -I. -I..  -I../cxx4   -g -O2 -c -o H5Zbzip2.lo H5Zbzip2.c
libtool: compile:  clang -DHAVE_CONFIG_H -I. -I.. -I../cxx4 -g -O2 -c H5Zbzip2.c  -fno-common -DPIC -o .libs/H5Zbzip2.o
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=compile clang -DHAVE_CONFIG_H -I. -I..  -I../cxx4   -g -O2 -c -o blocksort.lo blocksort.c
libtool: compile:  clang -DHAVE_CONFIG_H -I. -I.. -I../cxx4 -g -O2 -c blocksort.c  -fno-common -DPIC -o .libs/blocksort.o
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=compile clang -DHAVE_CONFIG_H -I. -I..  -I../cxx4   -g -O2 -c -o huffman.lo huffman.c
libtool: compile:  clang -DHAVE_CONFIG_H -I. -I.. -I../cxx4 -g -O2 -c huffman.c  -fno-common -DPIC -o .libs/huffman.o
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=compile clang -DHAVE_CONFIG_H -I. -I..  -I../cxx4   -g -O2 -c -o crctable.lo crctable.c
libtool: compile:  clang -DHAVE_CONFIG_H -I. -I.. -I../cxx4 -g -O2 -c crctable.c  -fno-common -DPIC -o .libs/crctable.o
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=compile clang -DHAVE_CONFIG_H -I. -I..  -I../cxx4   -g -O2 -c -o randtable.lo randtable.c
libtool: compile:  clang -DHAVE_CONFIG_H -I. -I.. -I../cxx4 -g -O2 -c randtable.c  -fno-common -DPIC -o .libs/randtable.o
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=compile clang -DHAVE_CONFIG_H -I. -I..  -I../cxx4   -g -O2 -c -o compress.lo compress.c
libtool: compile:  clang -DHAVE_CONFIG_H -I. -I.. -I../cxx4 -g -O2 -c compress.c  -fno-common -DPIC -o .libs/compress.o
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=compile clang -DHAVE_CONFIG_H -I. -I..  -I../cxx4   -g -O2 -c -o decompress.lo decompress.c
libtool: compile:  clang -DHAVE_CONFIG_H -I. -I.. -I../cxx4 -g -O2 -c decompress.c  -fno-common -DPIC -o .libs/decompress.o
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=compile clang -DHAVE_CONFIG_H -I. -I..  -I../cxx4   -g -O2 -c -o bzlib.lo bzlib.c
libtool: compile:  clang -DHAVE_CONFIG_H -I. -I.. -I../cxx4 -g -O2 -c bzlib.c  -fno-common -DPIC -o .libs/bzlib.o
/nix/store/k89nm2jva0qmvd970f84wq2iq1iwm9bs-bash-4.4-p23/bin/bash ../libtool  --tag=CC   --mode=link clang  -g -O2 -module -avoid-version -shared -export-dynamic -no-undefined  -o libh5bzip2.la -rpath /nix/store/m21s2xx1rvyyj288jrg6d5hb0k1nw4xj-netcdf-cxx4-4.3.1/lib H5Zbzip2.lo blocksort.lo huffman.lo crctable.lo randtable.lo compress.lo decompress.lo bzlib.lo    -lnetcdf
libtool: link: clang  -o .libs/libh5bzip2.so -bundle  .libs/H5Zbzip2.o .libs/blocksort.o .libs/huffman.o .libs/crctable.o .libs/randtable.o .libs/compress.o .libs/decompress.o .libs/bzlib.o   -lnetcdf  -g -O2
Undefined symbols for architecture x86_64:
  "_H5free_memory", referenced from:
      _H5Z_filter_bzip2 in H5Zbzip2.o
ld: symbol(s) not found for architecture x86_64
clang-7: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [Makefile:468: libh5bzip2.la] Error 1
make[2]: Leaving directory '/private/tmp/nix-build-netcdf-cxx4-4.3.1.drv-0/source/plugins'
make[1]: *** [Makefile:543: all-recursive] Error 1
make[1]: Leaving directory '/private/tmp/nix-build-netcdf-cxx4-4.3.1.drv-0/source'
make: *** [Makefile:413: all] Error 2

ryantm · 2020-11-23T20:33:46Z

Result of nixpkgs-review pr 69692 1

2 packages built:

nco
netcdfcxx4

ryantm · 2020-11-23T20:39:29Z

It is a regression on Darwin.

$ hydra-check  netcdfcxx4 --channel nixpkgs/nixpkgs-20.09-darwin --arch=x86_64-darwin
Build Status for netcdfcxx4.x86_64-darwin on nixpkgs/nixpkgs-20.09-darwin
✔ netcdf-cxx4-4.3.0 from 2020-09-20 - https://hydra.nixos.org/build/127602410

SuperSandro2000 · 2021-01-18T18:31:36Z

This is a semi-automatic executed nixpkgs-review which is checked by a human on a best effort basis and does not build all packages (e.g. lumo, tensorflow or pytorch).
If you have any questions or problems please reach out to SuperSandro2000 on IRC.

Result of nixpkgs-review pr 69692 run on x86_64-darwin 1

1 package failed to build and are new build failure:

netcdfcxx4: log https://termbin.com/41u1

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/netcdf-cxx4/versions

Github archives are not stable over time so fetchzip should be used instead of fetchurl

This resolves the Darwin linking issues Once and For All. Also, this makes the build parallel, which is nice too.

ofborg bot added 10.rebuild-darwin: 1-10 10.rebuild-linux: 1-10 labels Sep 27, 2019

c0bw3b added the 2.status: work-in-progress label Oct 21, 2019

r-ryantm closed this Jun 11, 2020

r-ryantm deleted the auto-update/netcdf-cxx4 branch June 11, 2020 04:55

ryantm restored the auto-update/netcdf-cxx4 branch June 11, 2020 05:42

ryantm reopened this Jun 11, 2020

ofborg bot added the 10.rebuild-darwin: 1 label Jun 11, 2020

r-ryantm closed this Jun 14, 2020

r-ryantm deleted the auto-update/netcdf-cxx4 branch June 14, 2020 03:30

ryantm restored the auto-update/netcdf-cxx4 branch June 14, 2020 05:04

ryantm reopened this Jun 14, 2020

r-ryantm closed this Jul 1, 2020

r-ryantm deleted the auto-update/netcdf-cxx4 branch July 1, 2020 04:38

ryantm restored the auto-update/netcdf-cxx4 branch July 1, 2020 04:59

ryantm reopened this Jul 1, 2020

FRidh closed this Nov 23, 2020

ryantm reopened this Nov 23, 2020

r-ryantm and others added 3 commits May 1, 2021 23:06

netcdfcxx4: 4.3.0 -> 4.3.1

3703007

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/netcdf-cxx4/versions

netcdfcxx4: use fetchzip

56858c2

Github archives are not stable over time so fetchzip should be used instead of fetchurl

netcdfcxx4: fix linking on Darwin

dfe5071

netcdfcxx4: switch to CMake

147a5cd

This resolves the Darwin linking issues Once and For All. Also, this makes the build parallel, which is nice too.

lukegb force-pushed the auto-update/netcdf-cxx4 branch from 26a1fde to 147a5cd Compare May 1, 2021 23:50

lukegb merged commit f3cd74b into NixOS:master May 2, 2021

r-ryantm deleted the auto-update/netcdf-cxx4 branch May 2, 2021 01:43

c0bw3b removed the 2.status: work-in-progress label Feb 23, 2022

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netcdfcxx4: 4.3.0 -> 4.3.1 #69692

netcdfcxx4: 4.3.0 -> 4.3.1 #69692

r-ryantm commented Sep 27, 2019

c0bw3b commented Oct 18, 2019

FRidh commented Feb 6, 2020

ryantm commented Nov 17, 2020

SuperSandro2000 commented Nov 23, 2020

ryantm commented Nov 23, 2020

SuperSandro2000 commented Nov 23, 2020

ryantm commented Nov 23, 2020

ryantm commented Nov 23, 2020

SuperSandro2000 commented Jan 18, 2021

netcdfcxx4: 4.3.0 -> 4.3.1 #69692

netcdfcxx4: 4.3.0 -> 4.3.1 #69692

Conversation

r-ryantm commented Sep 27, 2019

c0bw3b commented Oct 18, 2019

FRidh commented Feb 6, 2020

ryantm commented Nov 17, 2020

SuperSandro2000 commented Nov 23, 2020

ryantm commented Nov 23, 2020

SuperSandro2000 commented Nov 23, 2020

ryantm commented Nov 23, 2020

ryantm commented Nov 23, 2020

SuperSandro2000 commented Jan 18, 2021