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picard-tools: 2.20.5 -> 2.20.8 #69735

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merged 1 commit into from Sep 29, 2019
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Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

meta.description for picard-tools is: '"Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF"'.

meta.homepage for picard-tools is: '"https://broadinstitute.github.io/picard/"

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Rebuild report (if merged into master) (click to expand)

4 total rebuild path(s)

1 package rebuild(s)

1 x86_64-linux rebuild(s)
1 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
1 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
picard-tools

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/qpmiw5pbhdqdqbrsjz3nnmg10iv0gczj-picard-tools-2.20.8 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A picard-tools https://github.com/r-ryantm/nixpkgs/archive/8c397c2bc2f105e84983c2ca1b7fc21d2564dc8c.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/qpmiw5pbhdqdqbrsjz3nnmg10iv0gczj-picard-tools-2.20.8
ls -la /nix/store/qpmiw5pbhdqdqbrsjz3nnmg10iv0gczj-picard-tools-2.20.8/bin

cc @jbedo for testing.

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
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@jbedo jbedo left a comment

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Tested result, looks good to me.

@ryantm ryantm merged commit 8519cd1 into NixOS:master Sep 29, 2019
@r-ryantm r-ryantm deleted the auto-update/picard-tools branch October 6, 2019 23:36
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3 participants