NixOS · Sep 16, 2019 · Sep 16, 2019 · Sep 26, 2019 · Sep 26, 2019 · Sep 26, 2019
diff --git a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchurl, lib, patchelf, cdrkit, kernel, which, makeWrapper
-, zlib, xorg, dbus, virtualbox }:
+, zlib, xorg, dbus, virtualbox, dos2unix }:
 
 let
   version = virtualbox.version;
@@ -32,21 +32,25 @@ in stdenv.mkDerivation {
   KERN_DIR = "${kernel.dev}/lib/modules/${kernel.modDirVersion}/build";
   KERN_INCL = "${kernel.dev}/lib/modules/${kernel.modDirVersion}/source/include";
 
-  # If you add a patch you probably need this.
-  #patchFlags = [ "-p1" "-d" "install/src/vboxguest-${version}" ];
-
   hardeningDisable = [ "pic" ];
 
   NIX_CFLAGS_COMPILE = "-Wno-error=incompatible-pointer-types -Wno-error=implicit-function-declaration";
 
   nativeBuildInputs = [ patchelf makeWrapper ];
   buildInputs = [ cdrkit ] ++ kernel.moduleBuildDependencies;
 
-  postPatch = ''
+
+  prePatch = ''
     substituteInPlace src/vboxguest-${version}/vboxvideo/vbox_ttm.c \
       --replace "<ttm/" "<drm/ttm/"
+    ${dos2unix}/bin/dos2unix src/vboxguest-${version}/vboxguest/r0drv/linux/mp-r0drv-linux.c
   '';
 
+  patchFlags = [ "-p1" "-d" "src/vboxguest-${version}" ];
+  # Kernel 5.3 fix, should be fixed with VirtualBox 6.0.14
+  # https://www.virtualbox.org/ticket/18911
+  patches = [ ./kernel-5.3-fix.patch ];
+
   unpackPhase = ''
     ${if stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux" then ''
         isoinfo -J -i $src -x /VBoxLinuxAdditions.run > ./VBoxLinuxAdditions.run

diff --git a/pkgs/applications/virtualization/virtualbox/guest-additions/kernel-5.3-fix.patch b/pkgs/applications/virtualization/virtualbox/guest-additions/kernel-5.3-fix.patch
@@ -0,0 +1,50 @@
+--- a/vboxguest/r0drv/linux/mp-r0drv-linux.c
++++ a/vboxguest/r0drv/linux/mp-r0drv-linux.c
+@@ -283,12 +283,15 @@
+     if (RTCpuSetCount(&OnlineSet) > 1)
+     {
+         /* Fire the function on all other CPUs without waiting for completion. */
+-# if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 27)
++# if LINUX_VERSION_CODE >= KERNEL_VERSION(5, 3, 0)
++        smp_call_function(rtmpLinuxAllWrapper, &Args, 0 /* wait */);
++# elif LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 27)
+         int rc = smp_call_function(rtmpLinuxAllWrapper, &Args, 0 /* wait */);
++        Assert(!rc); NOREF(rc);
+ # else
+         int rc = smp_call_function(rtmpLinuxAllWrapper, &Args, 0 /* retry */, 0 /* wait */);
+-# endif
+         Assert(!rc); NOREF(rc);
++# endif
+     }
+ #endif
+
+@@ -326,7 +329,6 @@
+ {
+ #ifdef CONFIG_SMP
+     IPRT_LINUX_SAVE_EFL_AC();
+-    int rc;
+     RTMPARGS Args;
+
+     RTTHREADPREEMPTSTATE PreemptState = RTTHREADPREEMPTSTATE_INITIALIZER;
+@@ -337,14 +339,17 @@
+     Args.cHits = 0;
+
+     RTThreadPreemptDisable(&PreemptState);
+-# if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 27)
+-    rc = smp_call_function(rtmpLinuxWrapper, &Args, 1 /* wait */);
++# if LINUX_VERSION_CODE >= KERNEL_VERSION(5, 3, 0)
++    smp_call_function(rtmpLinuxWrapper, &Args, 1 /* wait */);
++# elif LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 27)
++    int rc = smp_call_function(rtmpLinuxWrapper, &Args, 1 /* wait */);
++    Assert(rc == 0); NOREF(rc);
+ # else /* older kernels */
+-    rc = smp_call_function(rtmpLinuxWrapper, &Args, 0 /* retry */, 1 /* wait */);
++    int rc = smp_call_function(rtmpLinuxWrapper, &Args, 0 /* retry */, 1 /* wait */);
++    Assert(rc == 0); NOREF(rc);
+ # endif /* older kernels */
+     RTThreadPreemptRestore(&PreemptState);
+
+-    Assert(rc == 0); NOREF(rc);
+     IPRT_LINUX_RESTORE_EFL_AC();
+ #else
+     RT_NOREF(pfnWorker, pvUser1, pvUser2);
diff --git a/pkgs/development/compilers/closure/default.nix b/pkgs/development/compilers/closure/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "closure-compiler";
-  version = "20190215";
+  version = "20190909";
 
   src = fetchurl {
     url = "https://dl.google.com/closure-compiler/compiler-${version}.tar.gz";
-    sha256 = "16rpl7x90ganpxlz6v9292cwx7dnkhklqx1nn161yj7ypf9bzd4k";
+    sha256 = "0km45pz19dz1hi8vjj290hyxdhr379iixmml0rs8crr4gvs3685w";
   };
 
   sourceRoot = ".";

diff --git a/pkgs/development/libraries/libfaketime/default.nix b/pkgs/development/libraries/libfaketime/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "libfaketime";
-  version = "0.9.7";
+  version = "0.9.8";
 
   src = fetchurl {
     url = "https://github.com/wolfcw/libfaketime/archive/v${version}.tar.gz";
-    sha256 = "07l189881q0hybzmlpjyp7r5fwz23iafkm957bwy4gnmn9lg6rad";
+    sha256 = "18s2hjm4sbrlg6sby944z87yslnq9s85p7j892hyr42qrlvq4a06";
   };
 
   patches = [

diff --git a/...ific/linux/zfs/build-fixes-unstable.patch → ...-specific/linux/zfs/build-fixes-0.8.patch b/...ific/linux/zfs/build-fixes-unstable.patch → ...-specific/linux/zfs/build-fixes-0.8.patch
diff --git a/pkgs/os-specific/linux/zfs/default.nix b/pkgs/os-specific/linux/zfs/default.nix
@@ -154,12 +154,12 @@ in {
     # incompatibleKernelVersion = "4.20";
 
     # this package should point to the latest release.
-    version = "0.8.1";
+    version = "0.8.2";
 
-    sha256 = "0wlbziijx08a9bmbyq4gfz4by9l5jrx44g18i99qnfm78k2q8a84";
+    sha256 = "0miax0h2wg4b2kn8n93804faajy2n1sh25knyy2hg3k77nlr4pni";
 
     extraPatches = [
-      ./build-fixes-unstable.patch
+      ./build-fixes-0.8.patch
     ];
   };
 
@@ -168,13 +168,13 @@ in {
     # incompatibleKernelVersion = "4.19";
 
     # this package should point to a version / git revision compatible with the latest kernel release
-    version = "0.8.1";
+    version = "0.8.2";
 
-    sha256 = "0wlbziijx08a9bmbyq4gfz4by9l5jrx44g18i99qnfm78k2q8a84";
+    sha256 = "0miax0h2wg4b2kn8n93804faajy2n1sh25knyy2hg3k77nlr4pni";
     isUnstable = true;
 
     extraPatches = [
-      ./build-fixes-unstable.patch
+      ./build-fixes-0.8.patch
     ];
   };
 }
diff --git a/pkgs/servers/atlassian/jira.nix b/pkgs/servers/atlassian/jira.nix
@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   pname = "atlassian-jira";
-  version = "8.3.2";
+  version = "8.4.1";
 
   src = fetchurl {
     url = "https://product-downloads.atlassian.com/software/jira/downloads/atlassian-jira-software-${version}.tar.gz";
-    sha256 = "0cqj7al9892psc5zqpfvj0gnjf8b4dpm2kx7sr21grczss1dkcs1";
+    sha256 = "0dkilp5wvda29rin2wj9zs2vgwyfning7cz6dyk0kyg45dl07wky";
   };
 
   phases = [ "unpackPhase" "buildPhase" "installPhase" "fixupPhase" ];
@@ -36,7 +36,7 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "Proprietary issue tracking product, also providing project management functions";
-    homepage = https://www.atlassian.com/software/jira;
+    homepage = "https://www.atlassian.com/software/jira";
     license = licenses.unfree;
     maintainers = with maintainers; [ fpletz globin ciil ];
   };

diff --git a/pkgs/tools/filesystems/fuse-overlayfs/default.nix b/pkgs/tools/filesystems/fuse-overlayfs/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "fuse-overlayfs";
-  version = "0.5.1";
+  version = "0.6.2";
 
   src = fetchFromGitHub {
     owner = "containers";
     repo = pname;
     rev = "v${version}";
-    sha256 = "03sdnnq0x44jlwf41snrrma4hxdiixmhynw35gjhm84slpljnngp";
+    sha256 = "03gad89jg0dif5wqdl1kh0rpmfc80pnkx8hk0v4hrlirr130dgl2";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];

diff --git a/pkgs/tools/system/stress-ng/default.nix b/pkgs/tools/system/stress-ng/default.nix
@@ -4,11 +4,11 @@
 
 stdenv.mkDerivation rec {
   pname = "stress-ng";
-  version = "0.10.02";
+  version = "0.10.05";
 
   src = fetchurl {
     url = "https://kernel.ubuntu.com/~cking/tarballs/${pname}/${pname}-${version}.tar.xz";
-    sha256 = "100daxz0j80jhmpfnqa78mvfwq1qj7zb67y7w9f747a0f1havvim";
+    sha256 = "0hkghs99fl8kzg3lkkd4w6cj5133zr9a415py0ng60kzrfffmgdy";
   };
 
   # All platforms inputs then Linux-only ones
@@ -21,6 +21,8 @@ stdenv.mkDerivation rec {
     substituteInPlace Makefile --replace "/usr" ""
   '';
 
+  NIX_CFLAGS_COMPILE = stdenv.lib.optional stdenv.hostPlatform.isMusl "-D_LINUX_SYSINFO_H=1";
+
   # Won't build on i686 because the binary will be linked again in the
   # install phase without checking the dependencies. This will prevent
   # triggering the rebuild. Why this only happens on i686 remains a